Methyloversatilis sp. RAC08: BSY238_1422
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Entry
BSY238_1422 CDS
T04449
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
metr
Methyloversatilis sp. RAC08
Pathway
metr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSY238_1422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metr03019
]
BSY238_1422
Enzymes [BR:
metr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSY238_1422
Messenger RNA biogenesis [BR:
metr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSY238_1422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AOF80575
UniProt:
A0A1B3LI98
LinkDB
All DBs
Position
complement(1536046..1537680)
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AA seq
544 aa
AA seq
DB search
MSLSLSDGPSLEICLNTEVDFAGLGLAEPLLRAISEEGYTQPTPIQQKAIPLVMAGRDLL
AAAQTGTGKTAGFTLPILHTLINRPAKIPPGRPRVLVLTPTRELAAQVEESVRTYGVHAG
MRSMVIFGGVGMNPQLQGLKQRVDILVATPGRLLDHLGEKTLDLSGVEIFVLDEADRMLD
MGFIRDIRKVIAALPKTRQTLLFSATFSPEIRELAHGLLNNAAEVEVAPRNTTAERVDQS
VYMVEQKQKRHLLAHLINTGEWTQVLVFTRTKHGANRLAEQLDKQGISALAIHGNKSQNA
RTRALADFKSNSLRVLVATDIAARGLDIDQLPHVVNFELPSVPEDYVHRIGRTGRAGASG
SAVSLVDREEVKLLSAIEKVTRQAIPKATAEGFVPGIVVEEPDRGPRPPGRGARNTDSPR
RKPVAGNAPRANGERPARAAQPKAAGGAPAPRGAGRGPGGGAPRNGNAGGRASGAGNGGS
GNRAPARAHDDDDDNRGNRIQPAAAAPREVNGNVMPRAGDARRGDARRPQAPALFSPRNR
SGSR
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
gtgtcactcagcttgagcgacgggccgtcgctggagatctgtttgaacactgaagtcgat
ttcgccgggctgggcctggctgaaccgctgttgcgcgccatttcggaagagggctacacg
caacccacccccattcaacaaaaggccattccgctcgtgatggcagggcgcgacctgctg
gccgcagcgcagacgggtaccggaaagaccgccggatttacgctgcccatcctgcacacg
ctgatcaaccgcccggcaaagattccgcctggccgcccgcgcgttctggtgctcacgccg
acgcgcgaactggctgcccaggtcgaggaatcggtacgcacctacggcgtgcatgccggc
atgcgctcgatggtcatcttcggtggcgtcggcatgaatcctcagctgcaggggctgaag
cagcgcgtcgacattctggtcgcgacgcctggccgtctgcttgatcacctcggcgaaaag
acgctggatctgtccggcgttgaaatcttcgtgctcgatgaagccgatcgcatgctggac
atgggtttcatccgtgatatccgcaaggtcatcgccgcattgccgaagacccgccagacg
ctgcttttttcggccaccttctcgccggagatccgcgagctggcgcatggcctgctgaac
aatgccgccgaggtcgaggtcgcgccacgcaacacgaccgccgagcgtgtggatcagagc
gtctacatggtggaacagaagcagaagcgccatctgcttgcacatttgatcaatacgggc
gaatggacacaggtgcttgtgttcacgcgcaccaagcatggcgccaaccggttggccgaa
cagctcgacaagcagggcatcagtgcgctggcgatccacggcaacaaaagtcagaacgcg
cgtacgcgagcgctggccgatttcaagagcaattcgctgcgcgtgctggtcgcgacagac
atcgctgcgcgcggactggacatcgaccagttgccgcacgtcgtcaatttcgaactgccc
agcgtgccggaagattatgtgcaccgcatcggccgcaccggccgtgccggcgccagcggc
tccgcggtgtctcttgtggatcgtgaagaggtcaagctgttgagcgcgatcgaaaaggtc
actcgccaggcgattcccaaagcgaccgctgaaggattcgtgcccggcatcgtggtcgag
gaaccggaccgcggccctcgtccgccgggccgcggtgcgcgcaacaccgactctccgcgt
cgcaaaccggtcgcaggcaatgcgccgcgcgccaatggtgaacgtccggcgcgtgccgct
cagcccaaggctgcaggcggggctccggcaccgcgtggagccggtcgcggcccgggcggt
ggcgcaccgcgcaacggcaatgcaggaggtcgtgcgtcgggggctggcaatggcggtagc
ggtaaccgcgcacccgcgcgtgcgcatgatgacgacgatgacaaccgcggcaaccgcatc
cagccggctgccgccgcgccgcgcgaagtgaatggcaatgtgatgccgcgtgcgggcgat
gcccgtcgcggcgatgcgcgccgtccgcaggcgccggcgctgttttcgccgcgcaaccgc
tcgggttcgcgctga
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