Methyloversatilis sp. RAC08: BSY238_3266
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Entry
BSY238_3266 CDS
T04449
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
metr
Methyloversatilis sp. RAC08
Pathway
metr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSY238_3266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metr03019
]
BSY238_3266
Enzymes [BR:
metr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSY238_3266
Messenger RNA biogenesis [BR:
metr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSY238_3266
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOF81263
LinkDB
All DBs
Position
complement(3563357..3564841)
Genome browser
AA seq
494 aa
AA seq
DB search
MSFEELGLIPELLRAVADTGYTVPTPIQAQAIPIVLAGRDVMGGAQTGTGKTASFTLPLL
QRLAPHASSSPSPARHPVRALIVCPTRELAMQVHESVRTYSKHLPLRSVCIYGGVDMKAQ
VKELREGREIVVATPGRLLDHVEGKSIALGQVQMLVLDEADRMLDMGFIPDIKRILALLP
AQRQSLLFSATFSEEIKKLAQAMLRDPQLIEVARRNATAETVTHKVHACATDDKRALLTH
LLTQPDYVSRQALVFVNTKFGASRLAVHLIRQGVAADAIHGDKSQQQRTEALEAFKSGAV
RVLVATDVAARGLDIEDLPFVINFELPHNAEDYVHRIGRTGRAGRSGEAISLMAPEERGR
VADIEKLIRKEIEPATPEGFDPGRARQREARESSPREARGGERPRERAVSSGERPERPES
AARRSRSSPGDAVRPPRSPRSSASQVAADGFDFSKPYESLPSGDVPAATSDGTAGGARRG
KRQVAALLGGNGKR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgaagaactcgggctcatccccgaattgctgcgcgctgtcgcagacaccggc
tacaccgtgccgacccccattcaggcccaggccattcccatcgtgctcgcgggccgcgac
gtcatgggcggcgcccagaccggcactggcaagaccgccagtttcacgctgccactgctg
cagcgccttgcgccgcacgccagcagctcgccatcgcccgcacgccacccggtacgcgcg
ctgatcgtctgcccgacgcgcgaactggcgatgcaggtgcacgaaagcgtgcgcacctat
tcgaagcacctgccgctgcgttcggtctgcatctacggcggcgtggacatgaaggcacaa
gtgaaggagttgcgcgaaggccgcgaaatcgtcgtcgccacgccgggtcgcctgctcgat
cacgtcgaaggcaagagcatcgcgctcggccaggttcagatgctggtgctggacgaagca
gaccgcatgctggacatgggtttcatcccggacatcaagcgcatcctcgcactgctgccc
gcacagcggcagagcctgctgttttcggccaccttctcggaagaaatcaagaagcttgcg
caggccatgttgcgcgacccgcagctgatcgaagtcgcacgccgcaatgccactgccgaa
accgtcacgcacaaggtgcacgcctgcgcgaccgacgacaagcgtgcgctgctgacgcac
ctgctgacgcagcccgactacgtgtcgcgtcaggcgctggtgttcgtcaataccaagttc
ggcgccagccggctggccgtacatctgatccgtcagggtgttgcagccgacgccatccac
ggcgacaagagccagcagcagcgcaccgaagcgctggaggcgttcaagagcggtgccgtg
cgcgtgctggtcgcgaccgacgtcgcagcgcgcggactcgacatcgaggacctgcccttc
gtcatcaatttcgagttgccgcacaacgcggaagattatgtacaccgtataggccgcact
ggccgagccgggcgcagcggcgaagcgatctcgctgatggcgccggaagagcgcggccgt
gtggccgacatcgaaaagctcatccgcaaggaaatcgaaccggcaacgccggaaggcttc
gaccccggccgcgcccgacagcgcgaagcgcgcgaatcgagtccgcgcgaagcgcgtggt
ggcgagcgcccgcgggagcgtgccgtcagcagcggtgagcggccggaacggccggaaagc
gcagctcgccgcagccggtcgtcgccgggcgacgcagtgcgtccgccgcgcagtccgcgt
tcatccgccagccaggttgcggcggacggtttcgacttcagcaagccttacgaatcactg
ccttccggcgatgtcccggccgcaacgtccgacggcaccgcaggtggcgcccggcgtggc
aagcgacaggttgccgcattgctgggcggcaacggcaagcgctga
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