Methylobacterium durans: DK389_27350
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Entry
DK389_27350 CDS
T05724
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mets
Methylobacterium durans
Pathway
mets03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mets00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DK389_27350 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mets03400
]
DK389_27350 (mfd)
Enzymes [BR:
mets01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DK389_27350 (mfd)
DNA repair and recombination proteins [BR:
mets03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DK389_27350 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
AAA_16
SecA_DEAD
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWN44821
UniProt:
A0A2U8WH18
LinkDB
All DBs
Position
complement(5865127..5868699)
Genome browser
AA seq
1190 aa
AA seq
DB search
MPRPEAAGRPLRPAEIRPLAKALEALKRGDSPTLARVPEGFDALVVADLARALSQGFEGP
AVLVHVARDSGRSNAFQNALRFVAPELEIMSVPAWDCQPYDRVSPNAAIAAQRMTALSRL
TRSRSSEEAPRVLLTTVNALVQRVPPRERIAVETFSAAIGNVVSMDKVTAWVEANGFLRT
GTVRDTGEYAVRGGILDLSPPGLPNPIRLDFFGDTLESIRAFDFETQRTIGQLRSLDLVP
MSEVQLTTETIRRFRQGYIQNFGAATRDDRLYETVSEGRRYAGLEHWMPLFYDHLDTLFD
YVAGVPLVFDAQVEEAVAERLALVQDYFQAREGALKTPQAGVAPYKPLPPRALYLTPNEW
KERVAASTIARLTPFALPEGADRAVIDCEGQPGRNFAPERAEESASVFDAAVAHVRDLQG
SGHHVILGSWSDGSRDRLCGVLTDHGLKKPVAITRLSDVYALKRGTDVAVAVWGLEAGFT
AGQLAIVAEGDILGDRLVRAKRKAKRPQDVILEVQALQPGDLVVHADHGIGRFVGLKTIT
AAGAPHDCLELQYTGGLLLLPVENIELLTRYGSEDAEVPLDRLGGGAWQARKAKMKRRIL
EMAGALIKVAAERFVKAAPRLAVPEGLYGEFAARFPFEETEDQGNAIEAVLDDLNAGRPM
DRLVCGDVGFGKTEVALRAAFAAAISGRQVAVVVPTTLLARQHYRTFAERFKGLPVQVAQ
ASRFVSSGELKKVREGLANGTVDIVVGTHALLAKAITFKDLGLIIVDEEQHFGVTHKERL
KALKSDVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFVTPFDPLLIREAL
LRERYRGGQAFYVVPRIEDLAEVKRFLDAEMPEIKVAVAHGQMAAGQLEDVMTAFYEGKF
DVLLSTTIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKARAYALFTTPANRQL
TVQAEKRLQVLQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQQMLEDA
VTALKAGIEEPVEEAWSPTIALGAPVTIPEDYVEDLTVRLGLYRRLSTIENDSEMESFGA
ELIDRFGPLPPEVEQLLKIVTIKILCRDTNVEKVEAGPKGVVIHFRDRAFANPPGLVAYV
AEQGSFAKVRPDMSIVFIRELDTVPERLKITTQILRSLAKIAGRKGRKAA
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atcccccgccccgaagccgcaggccgcccgcttcgccctgccgaaatccggcccctcgcg
aaggcgctcgaggcgctcaagcgcggcgacagcccgacgctcgcccgcgtgccggagggc
ttcgacgccctcgtcgtggccgatctcgcgcgcgcgctgagccagggtttcgagggcccg
gcggtgctggtccacgtggcgcgcgattccgggcgctcgaacgccttccagaacgcgctg
cgcttcgtcgcgcccgaactcgagatcatgagcgtgccggcctgggactgccagccctac
gaccgggtctcgccgaatgcggccatcgccgcgcagcgcatgacggcgctctcgcggctg
acccgctcgcgctcctcggaggaggcgccgcgcgtcctcctcaccaccgtcaacgccctg
gtgcagcgggtgccgccgcgggagcgcatcgcggtcgagaccttctcggcggcgatcggc
aacgtcgtctcgatggacaaggtcacggcctgggtcgaggcgaacggcttcctgcgcacc
ggcaccgtgcgcgacaccggcgagtacgccgtgcgcggcggcatcctcgacctctcgccg
ccgggcctgccgaacccgatccgcctcgatttcttcggcgacacgctggaatcgatccgc
gccttcgatttcgagacccagcgcacgatcgggcaattgcgctccctcgacctcgtgccg
atgagcgaggtgcagctcaccaccgagacgatccgccgcttccgccagggctacatccag
aattttggcgccgcgacccgggacgaccgcctctacgagacggtgagcgagggccgccgc
tacgccgggctcgagcactggatgccgctcttctacgaccatctcgacacgctgttcgac
tacgtcgcgggcgtgccgctggtgttcgacgcgcaggtcgaggaggcggtggccgagcgc
ctcgccctcgtccaggattatttccaggcccgcgagggcgcgctgaagacgccccaggcc
ggcgtcgcgccctacaagccgctgccgccgcgcgccctctacctcaccccgaacgaatgg
aaggagcgcgtcgccgcatcgaccatcgcgcggctcaccccgttcgcgctgcccgagggc
gcggatcgcgccgtcatcgattgcgagggccagccggggcgcaacttcgctcccgagcgc
gccgaggaatcggcgagcgtcttcgacgccgcggtggcgcatgtgcgcgacctgcaggga
tccggtcatcacgtgatcctgggatcctggtccgacggctcccgcgaccggctctgcggc
gtgctcaccgaccacgggctgaagaagccggttgcgatcacccgcctgtcggacgtctac
gcgctgaaacgcggcaccgacgtcgcggtcgcggtctgggggctggaggccgggttcacg
gcgggccagctcgcaatcgtggccgagggcgacatcctcggcgaccggctggtgcgcgcc
aagcgcaaggccaagcgcccgcaggacgtgatcctggaggtgcaggcgctgcagccgggc
gacctcgtcgtccatgccgaccacggcatcggccgcttcgtcggcctcaagaccatcacg
gcggcgggcgcgccgcacgattgcctggagctgcaatataccggcggcctgctgctcctg
ccggtggagaacatcgagctcctgacccgctacggctccgaggatgccgaggtgcccctc
gaccggctcggcggcggcgcctggcaggcccgcaaggccaagatgaagcgccgcatcctc
gagatggcgggcgcgctcatcaaggtcgcggccgagcgcttcgtgaaggccgccccccgg
ctggccgtgccggagggtctctacggcgagttcgccgcccgcttccccttcgaggagacg
gaggaccagggcaacgccatcgaggcggtgctcgacgacctcaatgcgggccggccgatg
gaccggctcgtctgcggcgatgtcggcttcggcaagaccgaggtggcgctccgcgccgcc
ttcgcggcggcgatctcggggcgccaggtggcggtggtggtgccgaccacgctgctcgcc
cgccagcactaccggaccttcgccgagcgcttcaagggactgcccgtccaggtggcgcaa
gcctcgcgcttcgtgtcgagcggggagctgaagaaggtccgcgagggactggcgaacggt
accgtcgacatcgtggtcggcacccacgccctgctcgccaaggcgatcaccttcaaggat
ctcggcctcatcatcgtcgacgaggagcagcatttcggcgtcacccacaaggaacgcctg
aaggcgctcaagagcgacgtccacgtgctgacgctctcggcgacgccgatcccgcgcacc
ctccagctcgccatgacgggcgtgcgtgaactctcgatcatagcgacgcccccggtcgac
cgcctggccgttcgcaccttcgtgacgcccttcgaccccctcctcatccgcgaggcgctg
ctgcgcgagcgctaccgggggggccaggccttctacgtggtgccgcgcatcgaggatctc
gccgaggtgaagcgcttcctcgatgccgagatgcccgagatcaaggtcgcggtcgcccac
ggccagatggcggcgggccagctcgaggacgtgatgacggccttctacgagggcaagttc
gacgtgctcctgtcgaccacgatcgtggaatcgggcctcgacatcccgaccgccaacacg
ctgatcgtgcaccgggccgacatgttcgggctggcccagctctaccagctccggggccgc
gtcggccgctcgaaggcccgggcctacgccctgttcacgacgccggccaaccgccagctc
acggtccaggccgagaagcgcctgcaggtgctgcagagcctcgacacgctgggcgcgggc
ttccagctcgcttcccacgatctcgacatccgcggcgccggcaacctcctcggcgacgag
caatccggccacatcaaggaggtcggctacgaactctaccagcagatgctggaggacgcg
gtgaccgcgctcaaggccggcatcgaggagccggtggaggaggcgtggtcgccgaccatc
gcgctgggcgccccggtcaccatcccggaggactacgtcgaggacctgaccgtgcgcctc
ggcctctaccggcgcctctcgacgatcgagaacgattccgagatggagagcttcggggcc
gagctgatcgaccggttcgggccgctgccgccggaggtggagcagctcctcaagatcgtg
acgatcaagatcctgtgccgcgacaccaacgtcgagaaggtcgaggccggcccgaagggc
gtcgtcatccacttccgcgaccgggccttcgccaacccgccagggctcgtggcctacgtc
gccgagcagggctccttcgccaaggttcggcccgacatgagcatcgtcttcatccgcgag
ctcgacacggtgccggagcgcctgaagatcacgacgcagatcctgcgaagcctcgccaag
atcgcggggcgcaagggtaggaaggcagcctga
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integrated database retrieval system
