KEGG   Methanobacterium sp. BRmetb2: CIT01_06480
Entry
CIT01_06480       CDS       T05692                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mett  Methanobacterium sp. BRmetb2
Pathway
mett03030  DNA replication
mett03410  Base excision repair
mett03420  Nucleotide excision repair
mett03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mett00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CIT01_06480
   03410 Base excision repair
    CIT01_06480
   03420 Nucleotide excision repair
    CIT01_06480
   03430 Mismatch repair
    CIT01_06480
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mett03032]
    CIT01_06480
   03400 DNA repair and recombination proteins [BR:mett03400]
    CIT01_06480
Enzymes [BR:mett01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CIT01_06480
    6.5.1.6  DNA ligase (ATP or NAD+)
     CIT01_06480
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CIT01_06480
DNA replication proteins [BR:mett03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CIT01_06480
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CIT01_06480
DNA repair and recombination proteins [BR:mett03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CIT01_06480
   NER (nucleotide excision repair)
    Other NER factors
     CIT01_06480
   MMR (mismatch excision repair)
    Other MMR factors
     CIT01_06480
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AXV38749
UniProt: A0A347AIF2
LinkDB
Position
1297818..1299479
AA seq 553 aa
MNYKELVDVYEALESTTKRLEKTAILADFYKSLDDEKLPMITMMTLGKVFPSWSEEEIGV
GSKLLMKSIATIVGVSVDDVEDKFRDTGDLGIATEELYKKRSQITFFSQPLTIEKVYNNI
RRMANISGNRAQSKKIDSLLELFSLASPREAKYIARTVIEELRVGVGEGTIRDALAESFK
VDKDVVERAHMLTNDLGLVAQVAYREGEDGLKKLTLKPGKPVKPMLAQLAEGIEASINDI
GGAYCETKYDGIRVQIHRKGDEILIFTRRLENIGNAVPDIRGYIDKSLPKHDFIVEGEII
VTKDGKPISFQYILQRIRRKYEIEKVMEKVPLTLYLFDVLFYEKPLIDEPFEKRRQILED
IVTVDGHKIELSRQVKVTPENIQDAVDLFNISIEQGHEGIMIKDPTAPYIPGIRGKKMLK
FKAEPETLDLVVVGGTYGRGKRAHFIGSYLLALKDGDDLKTIAHVATGLDDKTLLELSEK
MGKLFINKKGRQVEVVPKIVLEVAYSEIVKSPEYESGYSLRFPVVKGIREDKGVEDIDTL
ERVDSMFKMANVK
NT seq 1662 nt   +upstreamnt  +downstreamnt
atgaattataaagaacttgtggatgtttatgaagcattagaatccactactaagcgattg
gaaaaaacagccattcttgcagatttttataaaagtctggatgatgaaaaacttcccatg
attactatgatgactttagggaaggttttcccttcatggagtgaagaagaaataggggtc
ggctcaaaacttctcatgaaatctatagctactattgtaggtgtttctgttgatgatgtt
gaagataaatttcgggacactggcgacttgggaattgctactgaggaactttacaaaaaa
agatcacagatcacttttttttcacaaccactaaccatagagaaggtatacaataatata
aggagaatggcaaacatatctggaaacagagcgcaatcaaaaaaaattgatagtttactg
gaacttttttctttagcatctccaagagaggctaaatatattgctagaacagttattgaa
gagctaagagttggtgtgggggaaggaactatacgggatgctcttgctgaatcatttaag
gtagacaaggatgtggttgaaagagcacacatgctcaccaatgacctgggacttgtggcc
caggtggcttacagagaaggtgaagatggccttaaaaaattaactttaaaacctggcaaa
ccagttaaaccaatgctggcacagcttgcagaaggaattgaggcaagtattaatgatatt
ggtggagcatattgtgaaaccaaatatgatggtatccgcgtccaaatccaccgtaaaggc
gatgaaattttaatcttcacccgtagacttgaaaatattggaaatgcagttccagatata
agaggatatatagataaatcattaccaaaacatgattttatagtggaaggagaaataatt
gtcaccaaggatggaaaaccaatttcattccagtatattcttcaacgtatccggagaaag
tatgaaattgaaaaagtaatggaaaaagtccctttaactttgtatctatttgatgttctg
ttttatgaaaaaccacttattgatgaaccctttgaaaaacgccgccaaattcttgaagat
atcgttacagttgacgggcataaaattgagcttagccgccaggttaaagtgacccctgaa
aacattcaagacgcagttgaccttttcaatatatctattgaacagggacacgaagggatc
atgataaaggatcctactgctccatatatacctggtattcgtggtaaaaagatgcttaaa
tttaaggccgaacctgaaacccttgatctggtagtggtgggaggtacctacggccgtggt
aaacgggcccattttattggttcttatcttctggctttaaaagatggtgatgatcttaaa
actattgctcatgtagcaactggtttggatgataaaactcttttagagttatctgaaaaa
atgggaaaacttttcataaataaaaaaggaaggcaagttgaagttgtccctaaaatcgtt
ctggaagttgcttacagcgaaatagtcaaaagcccagaatatgaaagtggatattcgcta
agattccccgtagttaaaggaataagggaagataagggtgttgaagatattgataccctg
gaaagagttgattccatgtttaaaatggctaatgttaaataa

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