Methanobacterium sp. BRmetb2: CIT01_07205
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Entry
CIT01_07205 CDS
T05692
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mett
Methanobacterium sp. BRmetb2
Pathway
mett03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mett00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIT01_07205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mett03019
]
CIT01_07205
03009 Ribosome biogenesis [BR:
mett03009
]
CIT01_07205
Enzymes [BR:
mett01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CIT01_07205
Messenger RNA biogenesis [BR:
mett03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CIT01_07205
Ribosome biogenesis [BR:
mett03009
]
Prokaryotic type
rRNA helicases
CIT01_07205
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AXV38001
UniProt:
A0A347AGA4
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All DBs
Position
complement(1441006..1442298)
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AA seq
430 aa
AA seq
DB search
MDKIQFKDMNISFEIKQAIEDLGYEEPSPIQSLAIPKALEGKDIIGQAQTGTGKTAAFGI
PILEEIYPEDKSPQAIILCPTRELAIQVAEELRKLSKHMKKIRILPIYGGQPINRQIKSL
KKGVHLIIGTPGRVMDHMQRGTLDLTGVERVVLDEADEMLDMGFRDDIEFILKEIPHRRQ
TLLFSATMSKVILRLTKKYQSNPELLKVAHHKLTVPKINQTYYEVKDKMKLEVLSRLLDI
HDINLALVFCNTKRRVDRLVRDLETRGYLVGGIHGDLSQRQRDSVMSKFRNGKIDILVAT
DVAARGIDVPDVEAVFNYDVPNDDEYYVHRIGRTGRAGKKGNAFTFVSGKEIYKLRDIQR
YTKTKIKQEKIPSIKDIEKIKKNLLLEKIKNSIEEEDLNKYVHMVEGLIEIGYNSVEISA
ALLKRVMKEE
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggataaaatacaatttaaagatatgaatatttcttttgaaattaaacaagcaattgaa
gatttaggatatgaagaaccaagtccaatacaatctcttgccattccaaaagcattggaa
ggtaaggatattattggacaggcacagaccggtactggaaagacagcagcttttggaata
cctatattagaagagatttacccggaagataaatcgccacaagccataatcttatgtcct
actcgtgaactggcaatacaagtagcagaagagcttagaaaactttcaaaacatatgaaa
aaaatcagaatactgcctatctatggtggccaacctataaaccgtcaaataaaatcccta
aaaaaaggagtccatctaattataggaacccctggcagagtcatggatcatatgcaaaga
ggtaccctggatttgactggagttgaaagagtagttttagatgaagcagatgaaatgtta
gacatgggttttagagatgatatagaatttatattaaaagaaataccgcaccgaagacag
actctccttttttcagccaccatgtccaaggttattttacggttaaccaaaaaatatcaa
agtaatcccgaattattaaaagtagcccatcacaaactcaccgtgcctaaaatcaatcag
acctactatgaagttaaagataaaatgaagttagaggttttgtcccgacttctggatatc
catgacattaacctggctctggtattttgtaacactaaaaggagagtcgaccgactggta
agagatctggaaacccgtggttatctggtgggtggtattcatggtgatttaagtcagcga
caaagagactcggttatgtccaaatttagaaatggaaaaattgatattttggtcgcaact
gacgtagcagcccgtggaatagacgtacctgacgtggaagctgtttttaactatgatgtt
cccaatgatgatgaatattacgtgcacagaatcggaagaaccggccgggccgggaaaaaa
ggaaatgccttcacatttgtttccggtaaagagatatataaattaagggatatccagaga
tatactaaaaccaagattaaacaggaaaagataccctcaattaaagatatagaaaaaatc
aagaagaacctgctactggagaaaattaaaaacagtattgaagaagaagatcttaataaa
tatgttcatatggtggaaggattaattgaaattggatataattctgttgagatatctgca
gctcttttaaaaagggttatgaaggaagaataa
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