Methanobacterium sp. BRmetb2: CIT01_09865
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Entry
CIT01_09865 CDS
T05692
Name
(GenBank) single-stranded DNA-binding protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mett
Methanobacterium sp. BRmetb2
Pathway
mett03410
Base excision repair
mett03430
Mismatch repair
mett03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mett00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CIT01_09865
03430 Mismatch repair
CIT01_09865
03440 Homologous recombination
CIT01_09865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mett03400
]
CIT01_09865
DNA repair and recombination proteins [BR:
mett03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CIT01_09865
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CIT01_09865
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CIT01_09865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
AXV38488
LinkDB
All DBs
Position
1966398..1967822
Genome browser
AA seq
474 aa
AA seq
DB search
MSESLPDSMKRAFSKANEMVSNSEDIKIYSHIDCDGISAGAILSEMLDELNKEHEIEFIT
LDQIHDIEIKNELTIFSDLASGQDLDKNLEKMNSSTSKILILDHHPPVRKLSYNPAFNGE
FLEINPHYYGIDGSFDVSGGGMSYLLARTFEFTNLSWIGVLSAVGDMQNNISGKLTGLNK
LILKDAVDYGFIDLTDDLSIYGRQTRPIFVALSYFGDVNLPITNNKTECILMLKNLDIPR
KNGRKTRSLCDLTQVEKTKIFSELMRMLSREVPQKYVKHIPKLITGEAYDFLKEKKYTPL
RDASEFSTAVNACSRNNNPEIALNVLKGDRGIVLDAMEDLSYQHRRYLAEKIEWVESEDR
IIHLKNLQYFNGNEIKQEVVGTIAGMILSHGDWKKPIIGFTDIGDEKSGVKVSLRCSRLL
AYDGIHFGNIIKKVAEKLGGTGGGHSVACGAYIPEDKTEQFLKLFDATLNGRLA
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaagtctaccagattcaatgaaaagagctttttctaaggctaatgaaatggta
agtaattcagaggacataaaaatttacagtcatattgactgtgatggaatatctgcaggg
gccatactctcagaaatgttagatgagttaaataaagaacatgaaattgaattcataacc
ctggatcagattcatgatattgaaattaaaaatgagcttacaattttctctgatctagca
tctggacaggatttagataaaaatcttgaaaaaatgaacagttcaacttctaaaatactt
atattagatcatcaccctccagtacgaaaattaagttataatcctgctttcaatggtgaa
tttttagaaattaatcctcattactatggtatagatggttcttttgatgtatctggtgga
ggaatgtcttacctcctggcacgcacatttgaatttacaaatttgagctggataggagtt
ttaagtgctgtaggtgacatgcaaaacaatatatctggtaaattaactggtttaaacaag
ttaatattaaaagatgctgtcgattatggtttcatagatttgacagatgatctttcaatt
tacggacgtcaaaccagacctatatttgttgctctttcttattttggggatgtaaatctt
cccataaccaataataaaaccgaatgtattttgatgttaaagaacctagatattccccga
aaaaatggtagaaaaactcgttcactctgtgatttaactcaagttgagaaaactaaaata
ttttcggaattaatgagaatgctcagcagagaagttccacaaaaatatgttaaacacatt
cctaaattaattactggagaagcatatgattttttaaaagaaaaaaaatacacccccctt
agagatgcgtccgaattttcaactgcagtaaatgcatgcagccgaaataataaccccgaa
attgctttaaatgtacttaaaggtgataggggaattgtgttagatgctatggaggatttg
tcctatcaacaccggagatatttagctgaaaaaatagaatgggttgaaagcgaagataga
attatacaccttaaaaatcttcaatattttaatggtaatgaaataaaacaagaagtagta
ggcactattgctggaatgattttaagccatggggattggaaaaaacctatcataggattc
acagatattggagacgaaaaaagcggggtaaaagtttcactgagatgttcccgtctttta
gcttatgatggtatacattttggtaatatcatcaaaaaggttgctgaaaaacttggaggt
actggcggcggtcattcagtagcatgcggtgcttacataccagaagataaaactgaacaa
tttctcaaattatttgatgcaacattaaatggcagattagcctaa
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