Methylococcus geothermalis: GNH96_00790
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Entry
GNH96_00790 CDS
T06585
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
metu
Methylococcus geothermalis
Brite
KEGG Orthology (KO) [BR:
metu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
metu03016
]
GNH96_00790
Enzymes [BR:
metu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GNH96_00790
Transfer RNA biogenesis [BR:
metu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GNH96_00790
Prokaryotic type
tRNA splicing ligases
GNH96_00790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QJD28644
UniProt:
A0A858Q498
LinkDB
All DBs
Position
163109..164539
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AA seq
476 aa
AA seq
DB search
MNIDRLEQIDAYTWRLNPETGMHVPAILYGDEALVRAMDDKVLEQAANVARLPGIVQASY
AMPDAHWGYGFPIGGVAAFDAGAGGVVSAGGVGFDVSCGVRTLLTGLKRAAIEPVKPLLA
DALYADIPVGLGSHGKIRLDAKGLDAMLKGGAQWAVEQGWGEARDLARIEEHGRMEGARP
ENVSARAKERQRAEMGTLGSGNHYLEVQEVTEIFDAGTAQSFGIAEGDMVVSIHCGSRGL
GHQIGTEYLRLMQAAAKQYGIALPDRELACAPIESEVGQDYLGAMRAAINCALANRQILT
HLTRQVFARVLPAARLELLYDVSHNTCKFEEHLVDGERRRLYVHRKGATRAFGPNHPDLP
AAFAETGQPVLIGGSMGTASYILAGTSRSETLSFASACHGAGRSMSRHQATRTWQGRQVI
DQLAERGILIRSPSYRGVAEEAPGAYKDVDAVVRASDRAGLARLIARLEPIVCIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcgaccgtctcgaacagatcgacgcctacacttggcgcctgaatccggaaacc
ggcatgcacgtgcccgccatcctgtacggcgacgaggctctggtccgcgccatggacgac
aaggtgctggaacaggccgccaacgtcgccaggctgcccggcatcgtccaggccagctac
gccatgcccgacgcccactggggctatggctttcccatcggcggcgtggcggctttcgat
gccggcgcgggcggcgtggtttcggccggcggcgtcggcttcgacgtctcctgcggcgtg
cgcaccctgctcaccggcctgaagcgcgccgccatcgaaccggtgaaacccttgctggcc
gacgccctctatgccgacatcccggtcgggctcggcagccacggcaagataaggctggac
gccaagggcctcgatgccatgctgaaaggcggcgcgcaatgggcggtcgaacagggctgg
ggcgaggcgcgcgacttggcccgcatcgaggaacacggccgcatggagggcgcccggccg
gaaaacgtctcggcccgtgccaaggaacgccagcgcgcggaaatgggcaccctcggctcg
ggcaaccactacctggaagtccaggaagtgaccgagattttcgacgccgggaccgctcag
tccttcggcatcgcggaaggcgacatggtcgtcagcatccactgtggctcgcgcggcctg
ggccaccagatcggcaccgagtacctgcgcctcatgcaggctgcggccaagcaatacggc
atcgccctgcccgaccgggaactggcctgcgcgcccatcgaatcggaagtcggccaggat
tacctcggcgccatgcgcgccgccatcaactgcgccctcgccaatcgccagatactcact
cacctcacccggcaggttttcgcccgcgtgctgcccgcggcccggctggagctgctgtac
gatgtctcccacaacacctgcaagttcgaggaacacctcgtggacggcgagcgccgccgg
ctgtacgtccaccgcaaaggcgcgacccgcgccttcggccccaaccatccggacctgccg
gcagcattcgccgaaaccggccagcccgtcctcatcggcggctccatgggcacggcgtct
tacatcctggccggcacctcgcggagcgagacgctctccttcgcctccgcctgccatggc
gccggccgcagcatgagccgccaccaggccactcggacctggcaggggcggcaggtgatc
gaccagctcgccgaacgcggcatcctcatccgcagcccctcgtaccggggcgtcgccgag
gaagcccccggcgcctacaaggacgtcgacgccgtggtgcgggcctccgaccgggccgga
ctggcgcggctgatcgcccggctggagcccatcgtctgcatcaagggctaa
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