Methylococcus geothermalis: GNH96_02615
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Entry
GNH96_02615 CDS
T06585
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
metu
Methylococcus geothermalis
Pathway
metu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GNH96_02615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
metu03021
]
GNH96_02615
03019 Messenger RNA biogenesis [BR:
metu03019
]
GNH96_02615
Transcription machinery [BR:
metu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GNH96_02615
Messenger RNA biogenesis [BR:
metu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GNH96_02615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
AAA_22
S1CSD-TOTE-2
Mor
AAA
Motif
Other DBs
NCBI-ProteinID:
QJD28968
UniProt:
A0A858Q570
LinkDB
All DBs
Position
complement(554281..555537)
Genome browser
AA seq
418 aa
AA seq
DB search
MNLTDLKRKPVSELIEIAESLDIEGVARTRKQDLIFSILKKLAKSGEDIYGDGVLEILQD
GFGFLRSPDSSFLAGPDDIYVSPSQIRRFSLRTGDTISGKIRPPKDSERYFAMLKVEQIN
YEPPENAKHKILFSNLTPLFPVERFVLELGNGTTEDLTARVIDLVAPIGKGQRGLIVSPP
KAGKTMMLQNVAHSIAEKSPECYLIVLLIDERPEEVTEMQRSVKGEVVSSTFDEPPARHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALERPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDEVIYEEFKGTGNMELHLERKIAERRIYPAINI
NRSGTRREEYLVDPDELQKSWILRKILQPMDEMAANEFLLGKLKDSKTNREFFDMMKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcactgacctcaagcgcaagcccgtatccgaactgatcgaaatcgccgaatcc
ctggacatcgaaggcgtcgcccgaacccgcaagcaggatctgatcttttccatcctgaag
aagctcgccaagagcggcgaggacatctacggcgacggggtgctggagattttgcaggat
ggcttcggattcttgcgctcgccggacagctccttcctggccggaccggacgacatttac
gtctcgccgagccagatccggcgcttcagcctgcgcaccggagacaccatttccggcaag
atacggccgcccaaggacagcgagcgctatttcgccatgctcaaggtcgagcagatcaat
tacgagccgccggaaaacgccaagcacaagatcctgttctcgaacctgaccccgctgttc
ccggtcgaacgcttcgtgctggaactgggcaacggcaccacggaggacctgaccgcccgg
gtcatcgacctggtcgcccccatcggcaagggccagcgcggactgatcgtctcgccgccg
aaagccggcaagacgatgatgctgcagaacgtcgcccattccatcgcggaaaagagcccc
gagtgctatctcatcgtcctgctcatcgacgagcggccggaggaagtgaccgagatgcag
cgcagtgtcaagggcgaggtcgtgtccagcaccttcgacgagccgccggcgcggcatgtg
caggttgccgaaatggtcatcgaaaaggccaaacgcctggtggaacacaagcgggatgtg
gtcatcctgctcgattccatcactcgcctggctcgcgcctataacaccgtggtgccgtcc
tcgggcaaggtgctgaccggcggcgtcgacgccaatgccctggaacgccccaagcgcttc
ttcggtgccgcccgcaacatcgaggaaggcggcagcctgaccatcatcgccacggccctg
atcgacaccggctcgcgcatggacgaagtgatctacgaagaattcaagggcaccggcaac
atggagctgcacctcgaacgcaagatcgcggagcggcgcatctaccccgcgatcaacatc
aaccgctccggcacccgccgcgaggaatacctggtcgatccggacgagctgcagaaatcc
tggattctccggaagattctccagcccatggacgagatggcggcaaacgaattcctgctg
ggcaagctcaaggattccaagaccaaccgcgagttcttcgacatgatgaagcgctga
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