KEGG   Methylococcus geothermalis: GNH96_05110
Entry
GNH96_05110       CDS       T06585                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
metu  Methylococcus geothermalis
Pathway
metu03030  DNA replication
metu03410  Base excision repair
metu03420  Nucleotide excision repair
metu03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:metu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GNH96_05110 (polA)
   03410 Base excision repair
    GNH96_05110 (polA)
   03420 Nucleotide excision repair
    GNH96_05110 (polA)
   03440 Homologous recombination
    GNH96_05110 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:metu03032]
    GNH96_05110 (polA)
   03400 DNA repair and recombination proteins [BR:metu03400]
    GNH96_05110 (polA)
Enzymes [BR:metu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     GNH96_05110 (polA)
DNA replication proteins [BR:metu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     GNH96_05110 (polA)
DNA repair and recombination proteins [BR:metu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     GNH96_05110 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     GNH96_05110 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_2
Other DBs
NCBI-ProteinID: QJD31331
UniProt: A0A858QC30
LinkDB
Position
1061483..1064215
AA seq 910 aa
MSQVFPVSDAAPLLVLVDGSSFLYRAFFALPPLTNSRGEPTGAVYGVINMLRKLVQSYDG
AHIAVVFDAPGRNFRDELFEHYKAHRPPMPDDLRSQIEPLHQAVRALGLPMLIEPGVEAD
DVIGTLARQAVERGFRVLISTGDKDMAQLVCDRVTLENTMFDSRLDVEGVIAKFGVPPER
IVDYLALVGDASDNIPGVPKVGPKTAAKWLAEYGSLDALIARAGEVGGKIGENLRASLEL
IPLSRELATIRCDIPLPLAPESLKRRPPDKAALRELYARLEFKTLLRQLDAEPDGPKAGP
VVAPVPQVEMRYDMVTEQAALDRWLEKLEAAELFAFDTETSSLDYMRAEIVGVSFAVEPG
EAAYVPLAHDYPGVPVQLDRAMVLERLRPLLEDETKPKLGQHLKYDANVLLNHGIALRGI
RHDTMLESYVLNSTATRHDMDSLAERYLDRKTIHYEDVAGKGAKQIPFAQVAVEDACRYA
AEDADITLCLHRALWPQLESIPALRAVYETIEIPLVPVLSRIERTGVLVDVYKLAEQSRE
LELRMAQVELEAQTVAGETFNLASPKQIQTILYDKLGLPVIKKTPTGQPSTDESVLQDLA
ETFELPRLILEYRSLSKLKSTYTDKLPQQVNPRSGRVHTSYHQAVAATGRLSSSDPNLQN
IPVRTDEGRRIRQAFIAPPGHKLLAADYSQIELRIMAHLSGDANLLAAFAEDADVHRATA
AEVFGVPLEEVTLNQRRSAKAINFGLIYGMSAFGLAKQLGIQQKLAQGYIDLYFARYPGV
RAYMDSTRESARERGYVETLFGRRLHVPDIHSRNAQRRQYAERTAINAPMQGTAADIIKR
AMIAVDAWLEASRAPLRMIMQVHDELVFEVAEDFVSEAAAAVRDHMSRAAELAVPLVVDI
GTGDNWDEAH
NT seq 2733 nt   +upstreamnt  +downstreamnt
ttgtcgcaggttttccccgtgtccgatgccgctcctctgctcgtcctcgtcgacggctcc
tcgtttctctaccgcgcttttttcgccctgccgcccctgaccaattcccgcggcgagccg
acgggggcggtctatggcgtcatcaacatgctgcgcaaactggtgcagtcctacgacggt
gcccatatcgccgtggtgttcgacgcccccggccgcaatttccgcgacgaactgttcgag
cattacaaggcgcaccggccgcccatgccggacgatctgcggagccagatcgagccgctg
catcaggcggtgcgggctttgggcttgccgatgttgatcgagccgggcgtggaggcggac
gatgtcatcggcactctggccaggcaggcggtggagcggggcttccgggtgctgatctcg
accggggacaaggacatggcgcaactggtgtgcgaccgcgtgaccctggagaacaccatg
ttcgacagccggctcgacgtggagggcgtgatcgccaagttcggggtgccgcccgagcgc
atcgtcgactatctcgctctggtcggagacgcctcggacaacatccccggcgtgcccaag
gtcggccccaagaccgcggcgaaatggctggccgagtacggttcgctcgatgcgctgatc
gcccgtgccggcgaagtcggcggcaagatcggcgagaacctccgcgccagcctggagctg
atcccgctctcgcgcgaactggcgaccatccgctgcgatattccgctgccgctggcgccg
gagtcgctgaagcggcggccgccggacaaggcggcgctgcgcgagctgtacgcccggctg
gagttcaagaccttgctgcggcaactggacgccgagccggacggtccgaaggcgggtccc
gttgtcgccccggtaccgcaggtcgagatgcgctacgacatggtgacggagcaggcagca
ttggaccgctggctggagaaactcgaagcggccgaactgttcgccttcgataccgagacc
agcagcctggactacatgcgcgccgagatcgtcggtgtgtccttcgccgtcgagccgggc
gaggcggcctatgtgccgctggcgcacgactaccccggcgtgccggtccagctcgaccgg
gccatggtgctggagcgcctgcggccgctgctggaggacgaaaccaaacccaagctgggc
cagcatctcaagtacgacgccaacgtgctgctcaaccatggcatcgcgttgcgcggcatc
cgccacgacaccatgctggagtcctatgtgctgaacagcacggcgacccgccacgacatg
gactcgctggccgagcgctacctggaccgcaagaccatccattacgaggatgtcgccggc
aagggcgcgaagcagatcccgttcgcccaggtggcggtcgaggacgcttgccgctacgcc
gccgaggacgccgacatcacgctgtgcctgcaccgggcgctgtggccgcaactggagagc
atacccgcgctgcgggcggtgtacgaaaccatcgagattccgctggtgccggtgctgtcc
cgcatcgagcgaaccggcgtgctggtggacgtgtacaagctggcggagcagagccgcgag
ctggagctgcgcatggcccaggtcgagcttgaggcccagaccgtggccggcgagaccttc
aatctcgcatcgcccaagcagatccagaccatcctgtacgacaagctggggctgccagtc
atcaagaagacgcccaccggccagccctccaccgacgaatcggtgctgcaggatctggcc
gagactttcgagctgccgcggctgatcctcgaataccgctcgctgtccaagctcaagtcc
acttacaccgacaagctgccgcagcaggtgaatccccgtagcggccgggtccacacctcc
tatcaccaggcggtggcggcgaccgggcggctgtcgtcctccgatcccaatttgcagaac
atcccggtgcggaccgatgaaggccgccgcatccgccaggccttcatcgcaccgcccggc
cacaagctgctggcggcggactactcgcagatcgagctgcggatcatggcgcatctgtcg
ggcgatgcgaacctgctcgccgccttcgccgaggatgccgacgtgcaccgtgccaccgcc
gccgaggtgttcggcgtgccgctggaagaggtgacgctcaaccagcggcgttccgccaaa
gccatcaacttcgggctgatctacggcatgtccgccttcggtctggccaagcagctcggc
atccagcagaagctggcgcagggctacatcgacctctacttcgcccgctatcccggcgtg
cgcgcctacatggacagcacccgcgaatcggcccgcgagcgcggctacgtcgaaaccctg
ttcggccgccggctgcacgtgccggacatccactcccgcaacgcccagcgccgccagtac
gccgagcgcaccgcgatcaacgcgcccatgcaggggacggccgccgacatcatcaagcgg
gcgatgatcgcggtggatgcctggctcgaagccagccgtgcgccgctgcgcatgatcatg
caggtccacgacgaactggtgttcgaagtggccgaggatttcgtgtccgaagccgccgca
gccgtccgcgatcacatgagccgcgccgccgaactcgccgtgccgctggtcgtcgacatc
ggcacgggcgacaactgggatgaagcccattga

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