Methylococcus geothermalis: GNH96_08790
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Entry
GNH96_08790 CDS
T06585
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
metu
Methylococcus geothermalis
Pathway
metu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GNH96_08790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metu03019
]
GNH96_08790
03009 Ribosome biogenesis [BR:
metu03009
]
GNH96_08790
Enzymes [BR:
metu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GNH96_08790
Messenger RNA biogenesis [BR:
metu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GNH96_08790
Ribosome biogenesis [BR:
metu03009
]
Prokaryotic type
rRNA helicases
GNH96_08790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
DUF6683
UvrA_inter
Penicillinase_R
Transketolase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QJD30057
UniProt:
A0A858Q8A4
LinkDB
All DBs
Position
complement(1844358..1846088)
Genome browser
AA seq
576 aa
AA seq
DB search
MQSTETTFSFSDLAISPPILQAIREIGYEIPSPIQAASIPYLLAGHDLLGQAQTGTGKTA
AFALPILNGIDLERREPQALVLAPTRELALQVAEAFQSYARHLPDFHILPIYGGQSMDAQ
LRHLRRGVHVIVGTPGRVMDHLRRKSLSLDSLRTLVLDEADEMLRMGFIEDVEWILEHTP
PQRQIALFSATMPEVIRKVAKRHLRSPKEAKIEAKTATVEAITQRYWLGSSAHKLDALTR
ILEVEDFDAMIIFVRTKVLTEELAEKLEARGYSAAALNGDMSQALREKAVDRLKKNTLDI
LVATDVAARGLDVERISHVVNYDIPYDTEAYVHRIGRTGRAGRKGQAILFVAPREKRMLS
AIEKATRQRITEMRLPTHQDIAERRVEQFKAQVMATLEEEDLEFFRRLVQQLGREQGLSP
TDIAAALTFLVQKDRPLIPDEKPAPAEYTPSSREPQKKFRDSEPRDKKHKRKEREDGGVL
YRIDVGRNDGAAPKDIVGAIANEADIPGSSIGHIKLYDDFSTVSLPADMPKKSLKRLEKV
WIVGKPINIRLWTGDAPAAPAFGKPKQKKGYPKKNG
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctaccgaaacgaccttttccttttccgatctagccatctcgccccccattctc
caggccatccgcgaaatcggctacgagattccctccccgattcaagccgcgagcattcct
tatcttctcgccggccatgacctgctgggccaggcccagaccggcaccggcaagaccgcc
gctttcgccctgccgatcctgaacggcatcgatctcgagcgccgcgagccgcaggccctg
gtgctggcgccgacccgcgagctggcgttgcaagtcgccgaagccttccagagctacgcc
cgccatctgcccgatttccacatcctgccgatctatggcggccagtcgatggacgcccag
ttgcgccacctgcgccgcggcgtccacgtcatcgtcggcacgccggggcgggtgatggac
catctgcgccgcaagagcctcagcctggacagcctgcgcaccctggtgctggacgaggcg
gacgagatgctgcggatgggcttcatcgaagacgtcgaatggatcctggagcacaccccg
ccccagcgccagatcgccctgttctccgccaccatgccggaagtgatccgcaaggtcgcc
aagcgccatctgcgcagcccgaaggaagccaagatcgaggccaagaccgcgaccgtcgag
gccatcacccagcgctactggctgggctcgagcgcgcacaagctcgacgcgctgacccgc
atcctcgaagtcgaggacttcgacgccatgatcatcttcgtccgcaccaaggtgctgacg
gaagaactggcggaaaaactggaggcccgcggctattccgccgccgcactgaatggcgac
atgagccaggcgctgcgcgaaaaggcggtcgaccgcttgaagaaaaacaccctggacatc
ctggtcgccaccgacgtcgccgcacgcggtctggacgtcgaacgcatcagccatgtggtg
aactacgacatcccctacgacaccgaggcttacgtccaccgcatcggccgcaccggccgc
gccgggcgtaaaggccaagccatcctgttcgtcgccccccgcgaaaagcgcatgctgagc
gcgatcgagaaggccacacgccagcgcatcacagagatgcgcctgcccacccaccaggac
atcgccgagcgccgcgtcgagcaattcaaggcccaggtcatggcgacgctggaagaggag
gatctggagttcttccgccgcctggtgcagcagctcggccgcgagcaaggcctctcgccg
accgatatcgccgcggccctcaccttcctggtccagaaggaccgaccgctgattccggac
gagaagcctgcgccggccgaatacaccccgtccagccgcgagccgcagaaaaaattccgc
gacagcgaaccgcgggacaagaagcacaagcgcaaggagcgcgaagacggaggcgtgctc
taccgcatcgacgtgggccgtaacgacggcgcggcgcccaaggacatcgtcggcgccatc
gccaacgaagcggacattcccggcagctccatcggccacatcaagctgtacgacgacttc
agcacggtcagtctgccggccgacatgccgaaaaaatcgctgaagcggctggagaaagtg
tggatcgtcggcaagccgatcaacatccggctctggaccggcgacgcgcctgccgcgccg
gccttcggcaagccgaagcaaaagaagggctatccgaagaagaacggctga
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