Methylococcus geothermalis: GNH96_09250
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Entry
GNH96_09250 CDS
T06585
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
metu
Methylococcus geothermalis
Pathway
metu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GNH96_09250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metu03019
]
GNH96_09250
03009 Ribosome biogenesis [BR:
metu03009
]
GNH96_09250
Enzymes [BR:
metu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GNH96_09250
Messenger RNA biogenesis [BR:
metu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GNH96_09250
Ribosome biogenesis [BR:
metu03009
]
Prokaryotic type
rRNA processing factors
GNH96_09250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QJD30136
UniProt:
A0A858Q8V3
LinkDB
All DBs
Position
complement(1954963..1957653)
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AA seq
896 aa
AA seq
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MKRMLINATQPEELRVALVDGQKLYDFDIEIPSREQKKANIYKGLITRVEPSLEAAFVNF
GAERHGFLPFKEILPKYLSATGEESVSRREIKDVLKEGQEVVVQVEKEERGTKGAALTTY
ISLAGSYLVLMPNNPKAGGISRRIEGDVRSDMKETLSQLQIPDDMGVIIRTAGGGKTVEE
LQWDLDYLLQLWEAIERSTREKPAPFLIFQESNVIIRALRDHLRSDIDEILVDNPSTFRL
VHSFLQQVMPQFINKARLYQDNVPLFSRYQIESQIETAYSREVPLPSGGAIVIDHTEALT
TIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMAARNQRAVE
NRLREAVRVDRARIQLGRISRFGLMEMSRQRLRPSLIETALLTCPRCKGQGTIRSVESLA
LSILRVLEEETMKKNTDRIIAQLPVESATYLLNEKRAALQQIETRHNVAITIVPNPHLET
PNYDIQRIRSGGPGAEEETRKSSYQLISEKSPESPKSVRGPGASSEAPAVREFIPASPQP
SGGEQRIQAQPGQPGGGLIKRFLNILTGQRIEDQPSSEAARSSAGLALPAPFVQPAKTSG
EPEGGGAASTEESERFGGQRRRERDGGRRGAGNRRKHPAQRDDAGDRRHSGVTAETETVQ
EPATAEPQQTGQENRTKPQEGRGRRQEGRGQRRRATAEPVDMPLEEAAAGAAMPEDSAGA
ADSKERVPALEPVAPADAGERSEEGETVDVETAEEDLAEAEFRPRSSRSRRGGIRRRGRG
RRDRRPVAPGEQEAGEAPDATHPDGEKDGPERDVAEPGSDPAAPRETSDHRTVLSSPEAS
PAHVEREVRLDYPPEAEYRAPGLPPRAREEQRQDPEPREERSDFPPSTERGADSPD
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgatcaacgccacgcaacccgaggaactgcgggtcgcgctggtcgat
ggacaaaagctttatgacttcgacatagaaatcccttcgagggagcagaaaaaagccaat
atctacaagggcctgattacccgcgtcgagccgagtctcgaagcggcgttcgtcaatttc
ggggcggagcggcacggcttcctgccgttcaaggaaatcctgccgaaatatctcagcgcg
accggcgaggaatccgtctcccgccgggaaatcaaggacgtcctcaaggaaggccaggaa
gtcgtggtccaggtcgaaaaggaggaacgcggcaccaagggcgcggcgctgaccacctac
atcagcctggccggcagctacctcgtgctgatgccgaacaaccccaaggcgggcggaatt
tcccgccgcatcgagggcgatgtccggtccgacatgaaggagacgctgagccagctccag
atccccgacgacatgggggtgatcatccgcaccgcaggcggcggcaaaacggtcgaggaa
ctgcagtgggacctcgattatctgctgcaactgtgggaggcgatcgaacgctcgacccgc
gaaaagccggcccccttcctgattttccaggaaagcaacgtcatcatccgagcgttgcgc
gaccatctgcgcagcgacatcgacgaaatcctggtcgacaacccgtctaccttcaggctg
gtgcacagcttcctgcagcaggtcatgccgcagttcatcaacaaggcgcgcttgtatcag
gacaacgtgcctctgttcagccgctaccagatcgagagccagatcgagaccgcctattcc
cgcgaagtacccctgccttccggcggcgccatcgtcatcgaccacaccgaggccctgacg
accatcgacatcaattccgcgcgggccaccaagggcggcgacatcgaagaaaccgcgctg
aacaccaatctcgaggccgccgacgagatcgcccggcagctgcgcctgcgcgatctgggc
gggctgttcgtgatcgatttcatcgacatgatggctgcgcgtaatcagcgcgccgtggag
aaccgtctgcgcgaagcggtacgtgtcgaccgcgcacgcatccagctcggccgcatatcc
cgcttcggactgatggaaatgtcgcgccagcgcctgcggccatcgctcatcgaaaccgca
ttgttgacctgcccgcgctgcaagggccaggggacgatacgcagcgtcgaatcgctggcc
ctgtccatcctccgcgtcctggaggaggaaacgatgaaaaagaacaccgaccggatcatc
gcccaattgccggtcgagtcggccacctatctgctgaacgagaaacgcgccgcgcttcag
caaatcgaaacccggcacaacgtggccatcaccatcgtccccaatccgcacctcgagacc
cccaattacgacatccagcggatccggagcggcggacccggcgcggaagaggaaacccgc
aaaagcagttaccagctgatttcggaaaaatcgcccgaatccccgaaatccgttcgggga
cccggtgcgtcctcggaagcccccgccgtccgggaattcattcccgcctccccccagccc
agcggtggtgagcagcgcatccaggctcagccgggccagcccggcggcggactgatcaag
cgcttcctcaacatcctgaccggccagcgcatcgaagaccagccctcctctgaagcggcc
cggtcttcggcggggctggccctgccggcgccgttcgtgcagccggccaagacgtccggc
gagccggaaggaggcggcgctgcttcgacggaagaaagcgaacgcttcggcggccagcgc
cgtcgcgaacgcgacggcggccgacgcggcgccggcaatcgccgaaagcacccggcacag
cgggacgacgctggcgacagacgccacagcggggtgacggcagaaacggagaccgtccag
gaaccggcaacggcggaaccgcaacagaccgggcaagagaaccggacgaaaccccaggag
ggccgcggtcgtcgccaggagggtcgcggtcagcggcgccgggctacggctgagcccgtc
gacatgccgctggaagaagcggcggccggggcggcaatgccggaagactcggctggcgca
gcggattcgaaggaacgggtcccggccctcgagccggtcgctcccgcagatgccggtgaa
cgctcagaggaaggcgagactgtcgatgtcgaaacagccgaggaagacctggcggaagcg
gagtttcgcccccggtcttcacggtcgcgccggggcggcatccggcggcgtggccgtggc
aggcgggatcgccggccggtggcaccgggtgaacaggaggccggcgaagctcccgacgcc
acccaccccgatggggaaaaggacggccccgaacgcgatgtcgcggaacccggctctgac
ccggccgcacctcgggaaacaagcgatcaccgcaccgtgctctcctcccctgaagcctcc
cccgcccacgtggaacgggaagtacgcctggactaccctccggaagcggaataccgtgct
cccggtctgccgccccgagcgagggaggagcaaaggcaggatcctgaacctcgggaagag
cgcagcgatttccccccctctacagaacgcggagcggattccccggactga
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