Methylococcus geothermalis: GNH96_12640
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Entry
GNH96_12640 CDS
T06585
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
metu
Methylococcus geothermalis
Pathway
metu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
metu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GNH96_12640 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
metu03021
]
GNH96_12640 (rpoC)
03400 DNA repair and recombination proteins [BR:
metu03400
]
GNH96_12640 (rpoC)
Enzymes [BR:
metu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GNH96_12640 (rpoC)
Transcription machinery [BR:
metu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GNH96_12640 (rpoC)
DNA repair and recombination proteins [BR:
metu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GNH96_12640 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QJD31440
UniProt:
A0A858QCB0
LinkDB
All DBs
Position
complement(2733868..2738058)
Genome browser
AA seq
1396 aa
AA seq
DB search
MNFLKRQTQSEEFDAIRISLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAKIFGP
VSDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRI
ALLLDMQLREIERVLYFESYVVIDPGMTPLTRGQLLGEEEYQKMVEQYDDEFSAKMGAEA
IRELLRTMDLQAEVVQLREEINGTNSETKIKKYTKRLKAIESMLASNNRPEWMILTVLPV
LPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQESVD
ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLRLH
QCGLPKKMALELFKPFIFSKLQFRGLATTIKAAKKMVEREAPEVWDILDEVIREHPVMLN
RAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARSLM
MATNNILSPANGEPIINPTQDVVMGLYYMSRERTFAKGEGMIFSSIDEAEQAFLNGVVDL
HAKVTVRLREVVLGENGERTEVTKRVQTTVGRALIWNIVPDGIPFEMINVDMTKKAISRL
INHVYRTLGIKASVIFGDQLMYLGFSHATRAGVSFGVEDMEIPSRKDEIIQAAEREVKEI
QNQFASGLVTDGERYNKVVDIWSHANDQVAKVMMEGLGVDEVTGENGEIIKQKSFNSIFM
MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLTVLQYFISTHGARKGLA
DTALKTANSGYLTRRLVDVAQDLVITEDDCGTTDGLQMAPLIEGGDVVEPLAERVLGRVL
AEHAADPSNGEVLLEAGSMLDEHAVQLLEQHGVDNVRVRSVITCKTRYGVCASCYGRDLG
RGHKVNIGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAISNVEVKSSGQIRLTNLK
TVVNRDNALVAVSRSGEISVIDEHGRERERYKIPYGAVLSVREGGAVKAGQIVVNWDPHT
HPVVSEVRGRAKLIDFVEGVTVREQSDEMTGLSSMVVIDPKQRGGAGKELRPLVKLVDEN
GNDIFIPSTEITAQYFLPAGAIIGIRDGDLVEVGDVLARIPQESSKTRDITGGLPRVADL
FEARKTKDPAILAEATGTVSFGKETKGKRRLIITDASGEQHEVMVPKWRNITVFEGEHVE
QGETIAEGELTPHDILRLRGTAELASYLVKEIQDVYRLQGVKINDKHIEVIIRQMLRKVE
ITDPGDSSFLRGEQVDRSRLLEENDRLEEEGKVPACYEPVLLGITKASLSTESFISAASF
QETTRVLTEAAIRGSTDRLQGLKENVIVGRLIPAGTGLAYHAERRERAKLGEVEEPEAQT
IDTAEVEEALKQAFSL
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atcaattttctgaagcgccagactcagagcgaagagttcgatgcgatccgcatcagcctg
gcttcgcccgacatgatacgttcctggtcctacggtgaagtgaagaagcccgagaccatc
aactaccggaccttcaagccggagcgcgatggactgttctgcgccaagatcttcgggccg
gtgagcgactacgagtgtctgtgcggcaagtacaagcgcctgaagcaccgcggcgtgatc
tgcgaaaaatgcggcgtggaagtcaccctttccaaggtgcggcgcgagcggatggggcac
atcgaactggccagcccggtcgcccatatctggttcctcaagtcgctgccttcgcgcatc
gcgctgctgctcgacatgcagctgcgcgaaatcgagcgcgtgctttacttcgagtcctat
gtcgtgatcgatccgggcatgacgccgctcacccgcgggcagctcctcggtgaggaggaa
taccagaagatggtcgagcagtacgacgacgagttttccgccaagatgggcgccgaagcc
atccgcgaactgctgcgcaccatggatctccaggccgaggtcgtgcagttgcgggaggaa
atcaacggcaccaactccgagaccaagatcaagaagtacaccaagcggttgaaagcgatc
gaatcgatgctggcctccaacaaccggccggaatggatgatcctcaccgtgctgccggta
ctgccgccggacctgcgtccgctggtgccgctggatggcggccgcttcgccaccagcgat
ctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctcaagcggttgctggat
ctcaatgcgcccgacatcatcgtgcgaaacgagaagcgcatgctgcaggaatcggtcgat
gccctgctggacaacggccgccgcggccgggccatcaccggttcgaacaagcgcccgctc
aagtcgctggccgacatgatcaagggcaagcagggccggttccgccagaacctgctcggc
aagcgcgtggactactccggccgctccgtgatcgtggtgggtccgaccctgcgtctgcat
cagtgcggtctgcccaagaagatggcgctggagctgttcaagccgttcatcttcagcaag
ctgcagttccgcggcctcgccaccaccatcaaggcagccaagaaaatggtggagcgggag
gctcccgaagtctgggatatcctggacgaagtgatccgcgaacacccggtcatgctgaac
cgtgcaccgaccctgcaccgtctgggtatccaggcattcgagccgatcctgatcgaaggc
aaggcgatccagttgcatcccttggtgtgcaccgcattcaacgccgacttcgacggcgac
cagatggccgtgcacgtgcctttgtcgctggaggcacagctcgaggcccggtccctgatg
atggcgaccaacaatattctgtcgccggccaacggcgagcccatcatcaatccgacccag
gacgtcgtcatgggtctgtactacatgagccgggagcgcactttcgccaagggcgagggc
atgatcttctccagtatcgacgaggccgagcaggcgtttctcaatggtgtggtggacttg
cacgccaaggtgacggtccggctacgcgaggtcgttctgggcgaaaacggcgagcgtacc
gaggtgacgaagcgggtccagaccacggtgggccgcgcgctgatctggaacatcgtgccg
gacggcattccgttcgagatgatcaacgtcgacatgaccaaaaaggccatttcgcgtctg
atcaatcatgtctaccgaactctgggcatcaaggccagcgtcattttcggcgaccagttg
atgtatctcggtttctcgcatgcgacccgggccggcgtgtcgttcggcgtggaggacatg
gagatcccctcccgcaaggacgagatcatccaggccgccgagcgcgaagtgaaggaaatc
cagaatcaattcgcgtccggcctcgtgaccgacggcgaacgttacaacaaggtcgtcgat
atctggtcgcatgccaacgaccaggtggcgaaggtgatgatggaaggcctgggggtggac
gaggtcaccggcgaaaacggcgagatcatcaagcagaagtcgttcaactcgattttcatg
atggccgattccggcgcccgcggttcggcggcgcagatccgccagctggccggtatgcgc
ggcctgatggccaagccggacggctcgatcatcgagacgccgatcacggcgaacttccgg
gaaggactgacagtgttgcaatacttcatttcaacccacggcgcccgcaaggggctggcc
gacaccgcgctcaagacggccaactcgggatacctgacgcgccgtctggtggacgtcgcg
caggacctcgtcatcaccgaggacgattgcggtaccacggatggcctgcagatggctccc
ctgatcgaaggcggggacgtcgtcgagccgctggcggagcgggtgctggggcgggttctg
gccgagcatgcggccgatccatcgaacggcgaggtgctgctcgaagccggttcgatgctg
gacgagcacgctgtgcagctgctcgagcagcacggtgtcgacaacgtccgtgtgcgttcc
gtcatcacctgcaagacccgttacggcgtgtgcgcctcctgctacgggcgcgatctcggc
cggggccacaaggtcaacatcggcgaggcgatcggcgtcatcgcggcgcagtcgatcggt
gagccgggcacgcagctcaccatgcgcaccttccacattggtggtgcggcatcgcggtcg
gcggcgatcagcaacgtcgaagtgaagtccagcgggcagatccgcctgacgaacctcaag
actgtggtcaaccgcgataacgctctggtggcggtgtcgcgctcgggcgaaatcagcgtg
atcgatgaacacggtcgcgagagggagcgttacaagattccctacggcgcggtgctgtcg
gtgcgggaaggcggtgcggtcaaggcgggccagatcgtggtgaactgggatccgcatacc
cacccggtggtgtccgaagtgcgcggccgcgccaagctgatcgacttcgtcgagggcgtg
accgtccgcgagcagtccgacgaaatgaccggcctgagctcgatggtggtcatcgatccc
aagcagcgcggcggcgcgggcaaggagctgcggccgctggtcaagctggtggatgagaac
ggcaacgacatcttcatcccctcgaccgaaatcactgcacagtacttcctgccggccgga
gcgatcatcggcatccgcgacggcgacctggtcgaggtgggcgacgtgctggctaggatt
ccccaggagtccagcaagacccgcgacatcaccggcggtctgccgcgtgtcgccgacctg
ttcgaagcgcgcaagaccaaggatcccgccatcctggcggaagcgaccggcacggtttcc
ttcggcaaggaaaccaagggcaagcgccggctcatcatcaccgacgcgagcggcgagcag
cacgaggtcatggtgccgaaatggcgcaacatcacggtgttcgagggtgaacacgtggag
cagggagaaaccattgccgaaggcgagctgacgccgcatgacatcctgcggttgcgcggt
accgcggagctggcttcctatctggtcaaggaaatccaggacgtctaccgtctgcagggc
gtgaagatcaacgacaagcacatcgaggtgatcatccgccagatgctgcgcaaggtcgaa
atcaccgacccgggcgattccagcttcctgcgcggcgaacaggtggaccggtcgcggctg
ctggaggaaaacgaccgcttggaggaggaaggcaaggtgcccgcgtgttacgagcccgtg
ctgctgggcatcaccaaggcctcgctcagcaccgagtcgttcatctccgcggcatcgttc
caggaaaccacgcgcgtgctgaccgaagcggcgatccgggggtccaccgaccgcctgcag
ggtctgaaagaaaacgtgatcgtggggcgcctgatcccggcgggcaccggtctggcttac
cacgcggagcgcagggagcgggcgaaactcggcgaggtcgaggagcctgaggctcagacg
atcgatacggcggaggtcgaagaggccttgaaacaggcgttcagtctctga
DBGET
integrated database retrieval system
