Methylococcus geothermalis: GNH96_12645
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Entry
GNH96_12645 CDS
T06585
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
metu
Methylococcus geothermalis
Pathway
metu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
metu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GNH96_12645 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
metu03021
]
GNH96_12645 (rpoB)
03400 DNA repair and recombination proteins [BR:
metu03400
]
GNH96_12645 (rpoB)
Enzymes [BR:
metu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GNH96_12645 (rpoB)
Transcription machinery [BR:
metu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GNH96_12645 (rpoB)
DNA repair and recombination proteins [BR:
metu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GNH96_12645 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
FabMG
Motif
Other DBs
NCBI-ProteinID:
QJD30737
UniProt:
A0A858QA22
LinkDB
All DBs
Position
complement(2738136..2742212)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSFTEKKRIRKSFGKRQDVLEVPYLLATQVDSYRRFLQLDRQPSGRSDEGLHAALKSV
FPIKSHSGNILLEYVSYRLGDPVFDVKECQQRGTTYAAPLRVLVRLVVYDKEAPANAKVV
KDIKEQEIYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFNA
RIIPYRGSWLDFEFDHKDCVYVRIDRRRKLPATVLLRALGYDNEQIIGEFFDTNRFLLSP
SGVQLELIPERLRGDVASFDIRIGDQLVVEKDHRITARHIRMLQKENVSLLDVPKDYLYG
KILAHNVVDTTTGELIAKVNQEVTEDVYGRLVGAGIAEVRTLYVNDLDRGPYISNTMRID
LTETQLDALVEIYRMMRPGEPPTKEAAQTLFENLFFSPERYDLSAVGRMKFNRRLGRADP
TGPGVLENGDIIAVLKELINIRNGSGTVDDIDHLGNRRVRSVGEMVENQFRLGLVRVERA
VKERLSLPDADGLMPQEIINAKPVAASIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALG
PGGLARERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLAVYARTNEYGFLETPYRKV
VDGRVTGEIEYLSAIEEGQYYIAQASASVDEQGMLKDDLVSCRHKDEFTLASRENINYMD
VSSKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRTEKPLVGTGMERIVARDSGV
AVVAKRGGTVEFVDAGRIVVRVNDEETEAGVPGVDIYNLTKYTRSNQNTCINQKPLVKPG
DVVARNDVLADGPSTDMGELALGQNLLVAFMPWNGYNFEDSILISERVVQDDRFTTIHIE
EKTCVARDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKAGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMDGTVIDVQVFTRDGVKKDERARQIEEAEIE
KVRKDLNDQLRIIEKDFYQRAEQMVLGKVADMGPAGLKRGATVTREYLDSIKPAQWLEIR
LQDEDLNLQIEAIAEQIAQQREEIAKRLEEKRRKITMGDDLAPGVLKMVKVYLAVKRRIQ
PGDKMAGRHGNKGVISRIVPVEDMPYSADGTPVDIVLNPLGVPSRMNVGQVLETHLGWAA
KGVGLKIGRMLEAKARIEELRSFLTQVYNVSGRQEDIASLSDAEVMELAGNLQDGVPMAT
PVFDGATEQDIKAMLRLADLPESGQATLYDGRTGDVFDRPVTVGYMYMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM
YKNIVDGDHRMEAAMPESFNVLIKEIRSLGINIELEQD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcgtttaccgagaaaaaacgaattcgcaagagtttcggaaagcgccaggac
gtgctggaggtcccctatcttctggcgacacaggttgactcgtaccggcggtttttgcaa
ctcgacaggcagccctccggcaggagcgacgaaggcttgcatgcggcgttgaagtcggtt
ttcccgatcaaaagccattccggcaacattttgctcgaatatgtgagctatcgtctgggc
gatccggtgttcgacgtcaaggagtgccagcagcgggggactacttatgcggccccgttg
cgcgtgctcgtgcgtctggtcgtctacgacaaggaagcaccggcgaatgccaaggtggtg
aaggacatcaaggagcaggaaatctacatgggcgagattccgctcatgacggataacggc
accttcgtcatcaacggcaccgagcgggtgatcgtctcccagttgcaccgttcgcccggc
gtgttcttcgatcacgatcggggcaagacgcattcttcgggaaagctgttgttcaatgcc
agaatcatcccttatcgggggtcctggctggatttcgaattcgaccacaaggactgcgtt
tacgtccgtatcgaccgtcgccgcaagctgccggcaacggtcttgctgcgcgcgctgggt
tacgacaacgaacagatcatcggtgaatttttcgataccaatcgttttctgctgtcgccc
agcggtgtccagctcgagttgatccccgagcgtctgcgcggcgatgtcgcaagcttcgat
attcggatcggtgatcagctcgtggtcgagaaggatcaccggatcacggcgcgccacatc
cggatgctgcagaaggaaaatgtgagcctgctcgacgttcctaaagactatctgtatggc
aagatactcgcgcacaacgtcgtcgatacgacgacgggcgaactcatcgccaaggtgaac
caggaggtcaccgaggatgtctacggacgtctcgtgggcgctggcatcgccgaggtccgc
accctctatgtgaacgatctcgatcgcgggccgtacatctccaacaccatgcgtatcgat
ctgaccgagacgcaactggacgcgttggtggagatctatcgcatgatgcgccccggcgaa
ccgcccaccaaggaggctgcccagaccctcttcgagaatctgttcttttcccccgagcgc
tacgatctttccgccgtcggtaggatgaaattcaaccgtcgtctggggcgagccgatccg
accggcccgggtgtgctggaaaatggagacatcatcgcggtgttgaaggagctgatcaac
atccgtaacggcagcggcacggtcgatgacatcgatcatctgggcaaccgccgcgtgcgc
tccgtgggcgagatggtggagaaccagttccggctcggtctggtgcgggtcgagcgagcg
gtgaaggagcgtctgtcgctgcccgatgccgacggtctcatgccgcaggaaatcatcaat
gccaagccggtggcggcctcgatcaaggagtttttcggttccagccagctctcgcagttc
atggaccagaacaatccgctgtcggaagtcacccacaagcggcgcgtttccgcactgggg
ccgggcggcttggcccgcgagcgcgccggcttcgaagtgcgcgacgtgcataccacgcac
tacggtcgcgtctgcccgatcgagacccctgaaggtccgaacatcggcctgatcaactcg
ctcgccgtgtatgcgcgtaccaacgaatacggcttcctggagacgccgtatcggaaggtg
gtcgacggacgggtgacgggtgaaatcgaatacctgtccgccatcgaggaaggccagtac
tacatcgcccaggccagcgcctcggtcgatgagcagggcatgctcaaggatgacctggtc
tcgtgccgccacaaggacgaattcacgttggcttcgcgcgagaacatcaactacatggac
gtgtcgtccaagcagatcgtgtcggtcgccgcttccctgattccgttcctcgaacacgac
gacgccaaccgtgccttgatggggtcgaacatgcagcgccaggcggtaccgacgctgcgc
accgagaagcctctggtgggcaccggcatggagcgtatcgtcgcccgcgattccggggtc
gcggtcgtggccaagcgcggcggcacggtcgagttcgtggacgccgggcgcatcgtggtc
cgggtcaacgacgaggagaccgaggcgggcgtccccggtgtcgacatctacaacctgacc
aagtacacgcgttccaaccagaacacctgcatcaaccagaaaccgctggtgaagccgggg
gatgtggtggcccgcaatgacgttctggcggacggtccgtccaccgacatgggggaattg
gcgctgggccagaatctgctggtcgcgttcatgccgtggaacggctacaacttcgaagac
tcgatcctgatttcggagcgggtggtgcaggacgaccgcttcaccaccatccacatcgag
gagaagacctgcgtcgcccgagacaccaagctggggccggaggaaatcaccgccgacatc
ccgaacgtcggcgaggcggcgctgtccaagctggacgagtccggcatcgtctatatcggc
gccgaggtcaaggctggcgacatcctggtgggcaaggtcacccccaagggcgaaacccag
ctcacacccgaagaaaaactgctgcgtgcgatcttcggcgagaaggcctccgacgtgaag
gacacctcgttgcgcgtaccttccggcatggacggcacggtcatcgacgtacaggtgttc
acccgcgacggcgtgaagaaggatgaacgcgcccgccagatcgaggaggccgagatcgaa
aaggtccgcaaggacctgaacgaccagcttcgcatcatcgagaaggacttctaccagcgt
gccgagcagatggtgctgggcaaggtggccgacatggggccggccggcttgaaacgcggc
gccaccgtgacccgggaatacctggattcgatcaagcccgcgcaatggctggagatccgg
ctgcaggacgaggacctcaatctgcagatcgaagcgatcgcggagcagatcgcccagcag
cgcgaggagatcgccaagcgcctcgaagagaagcgccgcaagatcaccatgggcgatgat
ctcgcgccgggcgtgctcaagatggtcaaggtgtatctggcggtcaagcgccgcatccag
ccgggcgacaagatggccggacggcacggcaacaagggcgtgatttcgcgcatcgtgccg
gtggaagacatgccgtattcggccgacggcacgccggtcgacattgtgctgaatccgctg
ggcgtgccctcgcgcatgaacgtcggccaggtgctcgaaacccatctcggctgggcagcc
aaaggggtgggcctgaagatcgggcggatgctggaagccaaggcccggatcgaagagcta
cgttcgttcctgacccaggtttacaacgtgagcggccggcaggaggacatcgccagcctg
agcgatgccgaagtcatggaactcgcaggcaacctgcaggacggtgtgccgatggcgacc
ccggtgttcgacggcgcgacggagcaagacatcaaggccatgctgagactggccgatctt
cccgagagcggccaggcgactttgtacgacggacgcaccggcgacgtcttcgaccgtccg
gtgacggtcggctacatgtacatgctgaagctcaaccatctggtcgacgacaagatgcat
gcgcgctccaccggtccgtacagtctggtgacccaacagccgctgggcggcaaggcccag
ttcggcggacagcgtttcggtgaaatggaagtgtgggcactggaagcctatggcgccgcc
tacaccttgcaggagatgctgacggtgaaatccgacgatgtgaacggcaggaccaagatg
tacaagaacatcgtcgacggcgatcaccgcatggaggccgccatgcccgagtccttcaac
gtcttgatcaaggagatccgttcgctcgggatcaacatcgagcttgagcaggactga
DBGET
integrated database retrieval system
