Methylococcus geothermalis: GNH96_12950
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Entry
GNH96_12950 CDS
T06585
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
metu
Methylococcus geothermalis
Pathway
metu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GNH96_12950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metu03019
]
GNH96_12950
Enzymes [BR:
metu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GNH96_12950
Messenger RNA biogenesis [BR:
metu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GNH96_12950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QJD30785
UniProt:
A0A858QAN1
LinkDB
All DBs
Position
complement(2798191..2799555)
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AA seq
454 aa
AA seq
DB search
MSSELNSAGPAFADLGLAQPLLRAVSEAGYVNPTPIQAQAIPLLLAGGDLLAAAQTGTGK
TAGFTLPILHRLLENQAPRRSRRPRCLILTPTRELAAQVQASVETYGKHVPLKSTVMFGG
VGLNPQIRALEHGVDILVATPGRLLDHCGQKTVDLSGVEIFVLDEADRMLDMGFIRDIRR
ILGLLPKRRQNMLFSATFSDEIRALADGLLNNPGYVEVARRNAASDLVDQTVHLVAQEHK
RDLLTHLIRRHDWRQVLVFTRTKHGANRLAEKLAEDGIPAAAIHGNKSQAARTKALADFK
DGRVPVLVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGNAGSAVSLVAKD
ELKLLSGIERLIKRPIQRGIADGFNPPPRPQIERRDDRPRRPQEARDAGGRQSPGSQPKA
RASLGTRSAARHSPKPQQRRGGDGLRSQGGGKRG
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagaactgaattctgccggcccggcgttcgccgatttggggctggctcaaccc
cttttgcgcgcggtttccgaagcgggctacgtcaatcccacgcccatccaggctcaggcc
ataccgttgctgctcgccggtggcgatctgctcgccgcggcccagaccggaaccggcaag
accgccggtttcaccttgccgattctgcaccgcttactcgaaaaccaggctcctcgccgc
agccgccgcccgcgctgcctcattttgacgccgacccgcgaactggcggcgcaggttcag
gcatcggtcgaaacctacggcaaacacgttccgctgaaatccacggtcatgttcggtggg
gtgggactcaacccgcagattcgtgccctggaacacggggtcgacatcctcgttgccaca
ccgggccggctgctcgatcactgtgggcagaagaccgtcgatctttccggtgtggaaatc
ttcgtgctcgacgaggcggaccgcatgctggacatggggttcattcgcgacatccgacgg
attttggggctgctgccgaaacggcggcagaacatgttgttttcggccaccttctcggac
gaaatccgggcgctcgccgacggcctgctgaacaatcccggctacgtcgaagtggcgcgc
cgcaacgcggcttccgatctggtggaccagaccgtccacctggtggcccaggagcacaag
cgcgatttgctgacccatttgattcgccggcacgactggcgtcaggtgctggtgttcacc
cggaccaagcacggtgcgaaccggctggcggagaaactggccgaagacggcattccggcc
gcggcgatccatggcaacaagagccaggcggcgcgcaccaaggcgctggcagacttcaag
gacggccgggtgccggtcctggtagcgaccgacatcgccgcgcgcggcctggatatcgac
cagttgccgcacgtggtgaatttcgagttgccgaatgtgcccgaggattatgtccatcgc
atcggacgcacggggcgtgccggcaacgccggttcggcggtgtcgctggtggcgaaggat
gagctgaagctgctgagcgggatcgagcgtttgatcaagcggccgatccagcgcgggatc
gcggacggcttcaatccgccgccccgtccgcagatcgagcgcagggacgatcggccacgg
cgcccgcaagaggcgcgcgatgcgggtggacggcagtctcccggaagccagccgaaggca
cgggcgagtttggggactcgtagcgccgcccggcattcgccgaagccgcaacagcggcgg
gggggcgacggattgcgcagccagggtggcggcaaacggggctga
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