Methanobrevibacter sp. TLL-48-HuF1: K4897_01670
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Entry
K4897_01670 CDS
T08254
Name
(GenBank) exosome complex protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
metv
Methanobrevibacter sp. TLL-48-HuF1
Pathway
metv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K4897_01670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metv03019
]
K4897_01670
Messenger RNA biogenesis [BR:
metv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
K4897_01670
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
K4897_01670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
URN49733
LinkDB
All DBs
Position
complement(348211..348999)
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AA seq
262 aa
AA seq
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MVEIVPEITKESIINLAVNDKREDGRELDEYRDISIETDVISKAEGSARVKIGDTQVIVG
IKPQIGAPFPDTPDLGVLMTNCEMLPMADPTFEPGPPSEDSIELARVVDRGIRESELVDL
DKLCVEEGKHVWMLFIDLHIIDNCGNLFDACELAVMAALKSTKLPSASVADDEVVFDYEN
TIDLPINNEVAMCTFVKIGDKLILDPTLNEEKVADARLNVGVTKDAKICAMQKGGILPLT
KEDIFYCVDKAISKTKELVEYL
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaattgtacctgaaattacaaaggaaagtataattaatcttgctgtcaatgat
aaaagggaagatggcagggaacttgatgaatatagggatatttctattgaaaccgatgta
atatccaaagctgaaggttctgcaagagttaaaataggagatactcaggttattgtcggt
atcaaaccgcaaattggtgcaccatttccggatactcctgatttaggagttttaatgact
aactgtgaaatgctgccaatggctgaccctacttttgaacccggaccaccaagtgaagat
tcaattgaacttgcacgtgttgttgacaggggaattcgtgaaagtgaacttgttgatttg
gataagttatgtgttgaagaaggcaaacatgtttggatgttatttatagacttgcatatt
atagataactgcggaaatctttttgatgcctgtgaacttgctgtaatggcagctttaaaa
agcactaaattaccatctgcaagtgttgctgatgatgaagtcgtatttgactatgaaaac
actatagatttacctatcaataatgaagtagctatgtgtacttttgttaaaataggagat
aaattgattttggaccctactttaaatgaagaaaaagtagctgatgctcgtttaaatgta
ggtgttactaaagatgctaaaatttgtgctatgcagaaaggcggaattttaccgttaaca
aaagaagacatattttactgtgttgataaagcaatttcaaaaacaaaagaattagttgaa
tatctttaa
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