KEGG   Methanobrevibacter sp. TLL-48-HuF1: K4897_01680
Entry
K4897_01680       CDS       T08254                                 
Name
(GenBank) exosome complex protein Rrp4
  KO
K03679  exosome complex component RRP4
Organism
metv  Methanobrevibacter sp. TLL-48-HuF1
Pathway
metv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:metv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    K4897_01680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:metv03019]
    K4897_01680
Messenger RNA biogenesis [BR:metv03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     K4897_01680
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     K4897_01680
SSDB
Motif
Pfam: ECR1_N KH_6 ECR1_N_2 KH_1 RRP4_S1 RRP40_S1 KH_2 S1 KH-I_KHDC4-BBP KH_KhpA-B KH_KRR1_2nd TPK_catalytic PapC_C
Other DBs
NCBI-ProteinID: URN49735
UniProt: A0A9E7IV22
LinkDB
Position
complement(349730..350626)
AA seq 298 aa
MIYVENKDLVIPGEVLTDDEYYSGRGTFKEDGKICSSLMGLVSLRNKKIRVIPLKSKYVP
KKGDVVIGKIKDVRFSMWDVDINSPYSGILPAFEVFGREKKELNKVFDVGDVLFLRVVDV
DEVKKVKLGLKGRGMGKFRGGIIVDITPTKVPRLIGKKGSMINMIKDKTNCKIIVGQNGL
VWVKGDEDMEQLTKEIIHMIEAEAHTSGLTNKVKNKLYLAIDGELPQEDDYSDDYEELEK
PKLQNFKEELEQEEKEEQSKKDSTDFYKVIEELKKKNKKDKHLSYGNNSGNSYILNNR
NT seq 897 nt   +upstreamnt  +downstreamnt
atgatatatgtggaaaataaagatttagttattcctggtgaagtattgacagatgatgaa
tactactcaggaagaggtacctttaaagaggatggtaaaatttgttcttctttaatggga
ctagtttctttaaggaataaaaaaattagagttattcctcttaaaagtaaatatgttcct
aaaaaaggagatgtagttattggtaaaattaaagatgtcaggttctctatgtgggatgta
gatatcaattcaccatattccggaattttacctgcttttgaagtgtttggaagagagaaa
aaagaactcaataaagtatttgatgttggggatgttctatttttaagagttgttgatgtt
gacgaagttaaaaaagtcaaacttggattaaaaggtaggggaatgggtaaattcagagga
ggaataattgtagatattactccaactaaagttcctagactgattggtaaaaaaggttct
atgatcaacatgattaaggataaaaccaattgtaaaataattgttggtcaaaatggcctt
gtttgggtcaaaggtgatgaagatatggaacagcttactaaagaaattatccatatgatt
gaagccgaggctcatacttccggtttaacaaataaagttaaaaataaactatatttagct
attgatggtgaattgccacaggaagacgattatagtgatgattatgaagaattggaaaaa
cctaaacttcaaaatttcaaagaagaattagaacaggaagaaaaagaggaacaatcaaaa
aaagacagtactgatttttataaagtaattgaagaattaaaaaagaaaaataaaaaggat
aaacatttatcctacggcaataattctggcaattcttatatattaaataacagataa

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