Methanobrevibacter sp. TLL-48-HuF1: K4897_01680
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Entry
K4897_01680 CDS
T08254
Name
(GenBank) exosome complex protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
metv
Methanobrevibacter sp. TLL-48-HuF1
Pathway
metv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K4897_01680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metv03019
]
K4897_01680
Messenger RNA biogenesis [BR:
metv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
K4897_01680
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
K4897_01680
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Gene cluster
GFIT
Motif
Pfam:
ECR1_N
KH_6
ECR1_N_2
KH_1
RRP4_S1
RRP40_S1
KH_2
S1
KH-I_KHDC4-BBP
KH_KhpA-B
KH_KRR1_2nd
TPK_catalytic
PapC_C
Motif
Other DBs
NCBI-ProteinID:
URN49735
UniProt:
A0A9E7IV22
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Position
complement(349730..350626)
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AA seq
298 aa
AA seq
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MIYVENKDLVIPGEVLTDDEYYSGRGTFKEDGKICSSLMGLVSLRNKKIRVIPLKSKYVP
KKGDVVIGKIKDVRFSMWDVDINSPYSGILPAFEVFGREKKELNKVFDVGDVLFLRVVDV
DEVKKVKLGLKGRGMGKFRGGIIVDITPTKVPRLIGKKGSMINMIKDKTNCKIIVGQNGL
VWVKGDEDMEQLTKEIIHMIEAEAHTSGLTNKVKNKLYLAIDGELPQEDDYSDDYEELEK
PKLQNFKEELEQEEKEEQSKKDSTDFYKVIEELKKKNKKDKHLSYGNNSGNSYILNNR
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgatatatgtggaaaataaagatttagttattcctggtgaagtattgacagatgatgaa
tactactcaggaagaggtacctttaaagaggatggtaaaatttgttcttctttaatggga
ctagtttctttaaggaataaaaaaattagagttattcctcttaaaagtaaatatgttcct
aaaaaaggagatgtagttattggtaaaattaaagatgtcaggttctctatgtgggatgta
gatatcaattcaccatattccggaattttacctgcttttgaagtgtttggaagagagaaa
aaagaactcaataaagtatttgatgttggggatgttctatttttaagagttgttgatgtt
gacgaagttaaaaaagtcaaacttggattaaaaggtaggggaatgggtaaattcagagga
ggaataattgtagatattactccaactaaagttcctagactgattggtaaaaaaggttct
atgatcaacatgattaaggataaaaccaattgtaaaataattgttggtcaaaatggcctt
gtttgggtcaaaggtgatgaagatatggaacagcttactaaagaaattatccatatgatt
gaagccgaggctcatacttccggtttaacaaataaagttaaaaataaactatatttagct
attgatggtgaattgccacaggaagacgattatagtgatgattatgaagaattggaaaaa
cctaaacttcaaaatttcaaagaagaattagaacaggaagaaaaagaggaacaatcaaaa
aaagacagtactgatttttataaagtaattgaagaattaaaaaagaaaaataaaaaggat
aaacatttatcctacggcaataattctggcaattcttatatattaaataacagataa
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