Methanobrevibacter sp. TLL-48-HuF1: K4897_03920
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Entry
K4897_03920 CDS
T08254
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
metv
Methanobrevibacter sp. TLL-48-HuF1
Brite
KEGG Orthology (KO) [BR:
metv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
metv03016
]
K4897_03920
Enzymes [BR:
metv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
K4897_03920
Transfer RNA biogenesis [BR:
metv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
K4897_03920
Prokaryotic type
tRNA splicing ligases
K4897_03920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
URN50148
LinkDB
All DBs
Position
complement(798370..799818)
Genome browser
AA seq
482 aa
AA seq
DB search
MGIKDKIKKVRDNVYEVPGSVNKKMRASGRLYLDDESFEALEDGAIDQIVNIACLPGVHR
YAIGLPDIHFGYGFPIGGVAAFSEKNGIVSPGGVGFDINCGVRLIKTNLKQSDIEDKLDE
LIEALFKNIPSGVGSKGKIKLKENEIDDVLNFGAEWAVENGYGWEEDLEVLEENGRIKEA
DSTKVSDKAKRRGIPQLGSLGSGNHFLEIQVVDEIYNDEVAGVYGLEKGMVVIMIHSGSR
GCGHQVCSDYLRVMDKAYKNHQIDLADRQLACAPFDSKEAQDYLKAMYAAANYAWANRQM
MTHWIRETFEDILGESAKDMGMDIVYDVAHNIAKQETHKFKGNDMKLVVHRKGATRAFGP
GSEEIPEKYRKVGQPVLIPGTMGTASYVLHGTQTAMEETFGSTAHGAGRVLSRSQAKKDY
KPEEIKNNLAANGVKIRATTENVIAEEAPGAYKDVDSVVKISDSTGIAKLVAKVKPLAVT
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgggtattaaagataaaattaaaaaagttagagataacgtctatgaggttccaggaagt
gttaataaaaaaatgagggcttctggaagattgtatcttgatgatgaaagttttgaagct
ttagaagatggagctattgatcagattgtaaacattgcatgtcttccaggtgttcacaga
tatgcaataggcttgcctgatattcattttggatatggatttccaataggtggtgtagca
gcattcagtgaaaaaaacggaattgtatctcctggaggagtaggttttgatattaactgt
ggagtcaggttaataaaaaccaatcttaaacaatctgacattgaagacaaacttgatgaa
ttaattgaagcattgtttaaaaatattccgtctggtgtaggaagcaaaggaaaaatcaag
cttaaagaaaatgaaatagatgatgttttaaattttggagcagagtgggctgtagaaaat
ggctatggatgggaagaagatcttgaagttttagaagaaaacggaagaatcaaagaagct
gactcaactaaggtcagtgacaaagctaaaagaagaggaatacctcaattaggttcttta
ggttctggaaatcactttttagaaattcaggttgttgatgaaatctataatgatgaagta
gctggtgtatatggtcttgaaaaaggaatggttgtaattatgattcacagcggctcaaga
ggttgcggacaccaggtctgttctgattatttgagagtaatggataaagcttataaaaat
caccaaattgatcttgcagacagacagttggcttgtgcaccattcgattcaaaagaagct
caggactatttgaaagctatgtatgcagcagccaattatgcatgggcaaacagacaaatg
atgactcattggataagggaaacctttgaagacattttaggagaatcagctaaagatatg
ggaatggatattgtttatgatgtagctcacaacattgctaaacaggaaacacacaaattc
aaaggcaatgacatgaaattggtagtccacagaaaaggagctacccgtgcatttggaccg
ggaagtgaagagattcctgaaaaatacaggaaagttggtcagcctgtgttaattccggga
acaatgggaacagcatcttatgtattgcatggaacacaaacagcaatggaagaaacattc
ggatccactgcacatggtgccggaagggttttatcaagatcacaggctaaaaaagactac
aagcctgaagaaatcaaaaacaatttagctgcaaatggtgttaaaatcagagctacaact
gaaaatgtaatcgctgaagaagcaccgggcgcatacaaagatgtggacagcgtagttaaa
atatctgacagtacaggaatagctaaacttgttgcaaaagtaaaaccattagctgttaca
aaaggataa
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