Methanobrevibacter sp. TLL-48-HuF1: K4897_08340
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Entry
K4897_08340 CDS
T08254
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
metv
Methanobrevibacter sp. TLL-48-HuF1
Pathway
metv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K4897_08340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metv03019
]
K4897_08340
03009 Ribosome biogenesis [BR:
metv03009
]
K4897_08340
Enzymes [BR:
metv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K4897_08340
Messenger RNA biogenesis [BR:
metv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K4897_08340
Ribosome biogenesis [BR:
metv03009
]
Prokaryotic type
rRNA helicases
K4897_08340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
URN49280
UniProt:
A0A9E7IWD1
LinkDB
All DBs
Position
1764193..1765482
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AA seq
429 aa
AA seq
DB search
MSDITFDDFEILAEIKKSIKEMGFEEPSPIQELTIPEALKGIDIIGQAQTGTGKTLAFTV
PLLQKIFIPDNSPQAIVLCPTRELCIQVAGEIGKIGSHMKKLKILPVYGGQPIGRQIRVL
NKGVHVVIGTPGRVLDHIERKTLDLKGISTVVLDEADEMLDMGFREDIEKILRHTPKQRQ
TLLFSATMPNEIKRITKFYQKKPKHLKVAQSQMTVPEITQYYFETKERDKLENLTRLIDV
YDINLGLVFCNTKKRVDWVAKNLRNRGYAAEGIHGDMNQKSRDKVMNKFRNGNIEILIAT
DVAARGIDVPNVEVVVNYDVPQNPEYYVHRIGRTGRAGNMGYAFTFVAGKEIYSLRTIKK
VTKSKIKQRKIPSYKEMENIKNTQLMNSVKNSIEKDNLEKYVKLVEGAMEEDFDSVDIAA
ALLKMVKEN
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatataacatttgatgattttgaaattttagcagaaattaaaaaatcaataaaa
gaaatgggttttgaagagccaagcccaatacaagaattaactattcctgaagctcttaaa
ggaattgatataataggacaagcacagacaggtactggaaaaaccttagcatttactgtt
cctttacttcaaaagatttttattcctgataattctccacaagctattgttttatgccct
acaagggaattatgtattcaggtagctggtgaaatcggtaaaataggttcccatatgaaa
aaacttaaaattttaccggtttatggtggtcagcctattgggaggcagattagagtatta
aataaaggtgttcatgtagttattggaactcctggtcgtgttttagatcatattgaacgt
aaaactttagacttaaaaggaatttcaactgtagtattggatgaagcagatgaaatgttg
gatatgggtttcagagaggatattgaaaaaatattaagacacactccaaagcaaaggcaa
acattacttttttcagctacaatgcctaatgaaattaaaagaattactaaattttatcaa
aaaaagcctaagcatttaaaagtagctcaaagtcagatgactgttcctgaaataactcaa
tactattttgaaacaaaagaaagagataaacttgaaaatttaactcgtttaattgatgtt
tatgatattaatttaggcttggtattttgtaacactaaaaaaagggttgattgggttgct
aaaaacttaagaaacagaggttatgctgctgaaggaattcatggagacatgaatcagaaa
tcccgtgataaagtcatgaataaattccgtaatggaaatattgaaatcttaatagctact
gatgttgctgcacgtggaatcgatgtacctaatgttgaagtggttgttaactatgacgtt
cctcaaaatcctgaatactatgttcatagaattggaagaactggtagagcaggtaatatg
ggatatgcatttacctttgttgcaggtaaagaaatctatagtttaagaactattaaaaaa
gtaaccaaatctaaaatcaaacaaagaaaaattccatcatataaagaaatggaaaatatt
aaaaatactcagctaatgaatagcgttaaaaactccattgaaaaagataatttggaaaaa
tatgtaaaattagttgaaggtgctatggaagaagattttgattctgtagacatagctgcc
gcattattaaaaatggttaaggaaaattaa
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