Methanosarcina sp. 795: AAY43_01885
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Entry
AAY43_01885 CDS
T10855
Name
(GenBank) transcription factor
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
metw Methanosarcina sp. 795
Pathway
metw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
metw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AAY43_01885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
metw03000
]
AAY43_01885
03021 Transcription machinery [BR:
metw03021
]
AAY43_01885
Transcription factors [BR:
metw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
AAY43_01885
Transcription machinery [BR:
metw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
AAY43_01885
RNA polymerase III system
TFIIIB
AAY43_01885
RNA polymerase I system
SL1/TIF-1B
AAY43_01885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
DUF3378
RTT107_BRCT_5
Motif
Other DBs
NCBI-ProteinID:
ALK04681
LinkDB
All DBs
Position
complement(423521..424072)
Genome browser
AA seq
183 aa
AA seq
DB search
MSESSIKIENVVASTKLAEEFDLNVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSG
KVVCTGAKNVDDVHTVIGNMAKKLNSIGIKTVENPQITVQNIVASADLHTILNLNAIAIG
LGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTGGKSPEDCERGVEVVRQQLDNM
GLL
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatctagcatcaagatcgaaaatgtggttgcatccaccaaactcgctgaagaa
ttcgacttaaatgttattgaatccgagttcgaaggagctgagtacaacaagcagaagttc
cccggactcgtttacagggtgtcggatcctaaagctgcattcctggtctttacttccggc
aaggttgtatgtacaggggcaaaaaacgttgatgatgtacatacagttataggcaatatg
gcgaaaaagctgaacagtatcgggatcaagaccgttgagaacccccagataactgtccag
aacatcgttgcttccgcagacttgcatactattttgaacctgaatgcaattgcaataggg
cttgggcttgaaaatatcgaatacgaacctgagcagttcccaggtcttgtgtacagaatt
gatgagcccaaagtagttgtgcttatcttcagttccggaaaactggtagttacaggcggc
aagtctcctgaagattgcgagagaggcgtagaagtcgtccgccagcagctagacaacatg
ggacttctgtaa
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