Methanosarcina sp. 795: AAY43_02165
Help
Entry
AAY43_02165 CDS
T10855
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
metw Methanosarcina sp. 795
Pathway
metw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAY43_02165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metw03019
]
AAY43_02165
03400 DNA repair and recombination proteins [BR:
metw03400
]
AAY43_02165
Enzymes [BR:
metw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAY43_02165
Messenger RNA biogenesis [BR:
metw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAY43_02165
DNA repair and recombination proteins [BR:
metw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AAY43_02165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
Helicase_Sgs1
ResIII
HTH_23
Sigma70_r4_2
Terminase_5
Motif
Other DBs
NCBI-ProteinID:
ALK06540
LinkDB
All DBs
Position
490663..493290
Genome browser
AA seq
875 aa
AA seq
DB search
MYSALRQYFGYTSFRPLQEEIIRDVLEKKDVFVLMPTGGGKSMCYQLPALLFDGVTIVVS
PLISLMKDQVDGLEANGIAAACMNSTQSAREIRDVKTAFLENRLKILYIAPERLMTPGTF
SFLKKGKISLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKTGFPHIPIIALTATATERVR
EDIISQLNLNIAPEKGPYIASFNRKNLYYEVRPKKNTFSEITDYLRRHRGEAGIIYCQSR
NSVEALTKKLNLAGFRALPYHAGLSDADRARNQEMFIKDDVDIIVATIAFGMGIDKSNVR
FVIHYDLPRNLESYYQETGRGGRDGGPCECILFFSRGDRFKIEYFISQKTNEKEKDIALM
QLRQMVAYCEGNKCRRQTLMEYFGEILLEPCGNCDNCLTPKGTFDGTEAAKKLITCIQEL
NQRFGTNYVIDILTSSKNKKIRQNRHEKLKSYGIGREFTKEQWRSLASEMINTGLLNVSG
AKYPVLKLNAMSRKILRGTERVELVCPEGFVPEAKEHSMSSSIAACIEGKKADDLCYPVE
GSSEGGLSEKFSVAADILKNIEARKNLKSGKEPDPILFERLKALRKEIALKKNLPPYIIF
SDTTLKEMAAKFPRNHEEFHSITGVGDHKLRKYGDVFLKEIENYCRDYNLMPDGKPESPE
TTRRDPEYEGITSEEIVPNGNDSEAEIGIIGTKMPDSEADDMSSLETGGLLTKRRKYLDT
SIQDWSERNPLTGNSGEIDSAETLPESESVNVIKANPVEPVLSETDSLERTLSLFQKGFS
VDEIAEIQGMNTRTVFRQLEELALTGNIRDTGGVFPPGRQLQVKNALESLELEMDSLIRA
RIGENCQEEEMKFIKALLLSRICFSRPENSPENSE
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgtactcagccctgcgccagtatttcggatatacctcttttcgccctttgcaggaagaa
attatcagggatgtccttgagaaaaaagatgtttttgtgctcatgcctactggtgggggc
aaatcaatgtgctatcagttacctgctcttctctttgacggggttacaatcgttgtttct
ccactgatttccctgatgaaggatcaggttgacgggcttgaagcaaacgggattgctgcc
gcctgcatgaacagtacccagagtgctagagaaattcgggatgtgaaaaccgcttttctc
gaaaacaggttaaaaatcctttatattgctcccgaaaggctcatgacgccaggaacattt
tcttttttaaagaagggaaagatcagcctatttgcaattgacgaggctcactgcatttcc
gagtgggggcacgatttccgacctgagtatagaaaattgaaacttttgagagatccgaag
acaggatttcctcatattccgattatcgcgctcacggcaacagctacagaaagagttcga
gaagatattatatcgcaactcaaccttaatattgctccggaaaaagggccttacatagcc
agttttaaccgtaaaaatctttattatgaggtcagaccaaagaagaatactttttccgag
atcaccgattaccttcgccggcatagaggtgaagcaggaatcatctactgccagagccga
aacagtgtcgaagcacttacaaaaaaactgaatcttgctgggttcagggctcttccttac
catgcgggactttcagatgccgatagagcccgaaaccaggagatgttcattaaagacgat
gtggacatcatagtagctacaatcgctttcgggatgggtattgataagtctaatgtacgt
ttcgtaatacactatgaccttcccagaaatcttgagagctattatcaggagactggcaga
ggcggaagggatggcggtccctgtgaatgcattctttttttcagcaggggggaccgtttc
aagatagaatactttatctcacagaaaacaaacgagaaggagaaagacattgctcttatg
cagttaaggcagatggtagcttattgtgagggaaataaatgcaggcgccagactttaatg
gaatactttggagagattcttttagaaccttgtgggaactgtgacaactgccttactccg
aaaggtacttttgatggaacggaagctgcaaagaaattgataacctgcatccaggagttg
aaccagcgctttggcactaattatgttatcgatattctcacaagctcaaaaaataaaaaa
atccggcaaaatcgacatgaaaaattgaaaagttacggcattggtcgggagtttactaaa
gaacaatggaggtcgttagcttccgaaatgataaataccggtctcctaaatgtgagcggc
gcgaagtatcctgtattgaaacttaacgcaatgagcaggaagatattgagagggacggaa
cgagttgagcttgtctgtcctgaaggctttgtgcctgaagctaaagaacactcgatgtct
tcttcaatagctgcctgtatagaaggcaaaaaagctgatgatttgtgttaccctgtagaa
gggtcttcagaagggggtctctcagaaaaattttcagttgcggctgatattctgaaaaat
atagaagccagaaagaatctaaaatcaggaaaagagcctgatcctattctttttgagcgg
ttaaaagctctgagaaaggaaattgccctaaagaaaaatcttcctccttacatcattttc
tctgacaccacacttaaggaaatggctgcaaagtttccgcgcaatcatgaggaatttcat
tccattacaggggttggagatcataaattgaggaagtacggggatgttttcctcaaggaa
attgagaactattgtagagattataatttaatgcctgatggaaaacctgaaagtccagaa
actacccgcagagaccctgaatatgaggggataacatcagaggaaatagttccaaatggt
aatgattccgaagctgaaattgggattattgggactaaaatgcctgattctgaagctgat
gacatgagcagcttagaaactggcggcttactaacaaaaaggagaaaatatctggacacg
agcattcaggactggtcagagagaaacccattgacaggcaactcaggagaaatagactcg
gcagaaactttacctgaatcagagtctgtaaatgtgatcaaagcaaaccctgttgaacct
gttctttctgaaacggattcccttgaaagaactctttctctctttcagaaggggttcagt
gtagatgagattgctgaaatccagggaatgaatacccgaaccgttttcagacaacttgaa
gagctcgctcttactggaaatatcagggatactggaggagtctttcccccgggaagacag
ttacaggtaaaaaatgcactggaatccctcgagctggaaatggattccttgattagagcc
agaataggtgaaaactgccaggaagaagaaatgaaatttatcaaggctttacttctgtcc
agaatctgcttttctcgacctgagaacagtcctgagaacagtgagtga
DBGET
integrated database retrieval system
