Methanosarcina sp. 795: AAY43_04695
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Entry
AAY43_04695 CDS
T10855
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
metw Methanosarcina sp. 795
Pathway
metw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
metw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AAY43_04695 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
metw03021
]
AAY43_04695 (tfb)
Transcription machinery [BR:
metw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
AAY43_04695 (tfb)
Prokaryotic type
Archaeal type
TFB
AAY43_04695 (tfb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cas12f1-like_TNB
Sigma70_r4
Zn_ribbon_SprT
Lar_restr_allev
Zn_ribbon_LysW
RPA_interact_C
Trm112p
DUF7577
Zn_ribbon_IS1595
HTH_AsnC-type
HTH_Tnp_ISL3
BRF2-like_C_cyclin_rpt
Zn_ribbon_PaaD
A2L_zn_ribbon
zf-ChsH2
Ribosomal_S27e
Motif
Other DBs
NCBI-ProteinID:
ALK05128
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All DBs
Position
1080839..1081852
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AA seq
337 aa
AA seq
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MVEIERVRYSDTLEREKIRAMIKARKEKQKEQSFETEKAVCPECGSRNLVHDYERAELVC
GDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYTIHDKGLSTMIDWRNRDSYGKS
ISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVRETAAVVYRKA
VDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSRVSRKEIGRTYRFISRELALK
LMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQASEKELTSGRGPTGVAAAAIYVASILC
GERRTQREVADVAGVTEVTIRNRYKELAEELDIEIIL
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaatcgaaagggttcgctattcggacactcttgaaagggaaaaaatacgtgcc
atgatcaaagctcgcaaagagaagcaaaaagagcaaagttttgagacggaaaaggcagtg
tgtccagaatgcggtagcagaaacctcgttcacgactacgagcgtgccgagcttgtgtgt
ggggactgcggacttgtcattgatgccgattttgtagatgagggcccagaatggcgagct
ttcgatcatgatcagcgtatgaagcgttcccgtgtgggtgcgccaatgacatacacaatc
cacgacaaagggctttccacaatgattgactggagaaaccgtgattcctacgggaagtca
atttcttccaaaaaccgtgctcagctctatcgtttaagaaaatggcagcgtagaatccgc
gtaagtaacgcaactgaaagaaacctcgcatttgcactatccgaactggacagaatggct
tctgcccttggtctccctagaacggtcagggaaactgcagcagtcgtctacagaaaagct
gtggataaaaatcttatccgtggaagaagcattgagggtgtcgccgcagctgccctttat
gctgcctgccgtcagtgcagcgttccaagaacccttgatgagatcgaagaggtatccagg
gtcagccggaaagagatcggaagaacttaccgctttatttccagagaattggcactgaaa
cttatgcctacctcaccaattgattatgtcccaaggttctgttctggccttaaccttaaa
ggagaagtccagtccaagagcgttgagatcctgaggcaggcttccgagaaggaactcaca
agtggaaggggtcccacaggagttgctgcagctgcaatctatgttgcatccattctctgc
ggtgaacgcagaacccagcgtgaagttgcagatgtagccggcgtaacagaagttaccatc
cgaaacaggtacaaagaacttgcagaagaactggatattgaaattatcctctaa
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