Methanosarcina sp. 795: AAY43_09720
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Entry
AAY43_09720 CDS
T10855
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
metw Methanosarcina sp. 795
Pathway
metw03420
Nucleotide excision repair
Brite
DNA repair and recombination proteins [BR:
metw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AAY43_09720
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AAY43_09720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND3
nSTAND1
AAA_22
AAA_25
DnaJ_CXXCXGXG
Viral_helicase1
AAA_14
RsgA_GTPase
AAA_18
cobW
SLFN-g3_helicase
AAA_23
ATPase
ATPase_2
T2SSE
BCA_ABC_TP_C
Motif
Other DBs
NCBI-ProteinID:
ALK05926
LinkDB
All DBs
Position
complement(2238917..2241934)
Genome browser
AA seq
1005 aa
AA seq
DB search
MKNIIIKGAREHNLKDITVELPRDKFIVITGVSGSGKSTLAFDTIYAEGQRRYVESLSAY
ARQFLGLMNKPDVDSIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLFARIGTPYC
PTHNIKIESQSPEKIADSLSRECEGMITILAPVVRQKKGTYQHLFRELNSEGFSRIRVNG
EIHRTDDEITLDRYKKHDIEVVIDRLDPSEDRSRLVEACENALKKADGLLIAVDSEGKDH
LYSSNMACPICGMAFEELQPRMFSFNSPFGACEACNGLGFKMEFDPDLIIPNKKLCLADG
AVALYRNYLDSYRSQHLGAVAKHFGFDIFTPIEALTDEQYNVLMYGSNERMQFEMSMKNG
DAHWSHKGTWEGLIPQSERLYSQTKSEYRRKELEKFMQVKPCPKCEGRRLKEKVLAVKLG
EKSIVDVTDLSILDCIRFFENLDLSEKEREIAKQVLKEIRSRLGFLEHVGLGYLTLSRSS
GTLSGGEAQRIRLATQIGSNLMGVLYVLDEPSIGLHQRDNERLIQTLQTLRDLGNTLIVV
EHDEDTIRAADYVLDIGPGAGIHGGYVVAKGTPEEIELNKESLTGQYLSGEKQIKPPAFR
RQSDSFIRLKGCRANNLKDIDVNIPIGVLTVVTGVSGSGKSTLIYDTLYKALTKKINKSN
VTPGEYDELVFDSEVDKVIVIDQSPIGRTPRSNPATYTKVFDAIRQAFAETKEAKIRGYK
NGRFSFNVKGGRCEACQGDGMIKIEMNFLPDVYIECEECKGTRYNRETLEVKYRGKSIAE
VLDMTVEEAAEHFENIPAIKSKLDTLTRVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKK
GTGRTIYLLDEPTTGLHFHDVKKLIAVLNGLVAKGNTVVVIEHNMDVIKSADYIIDLGPE
GGDAGGEIIAEGTPEEVALVQGSHTARFLAPRLSNLYLSMSEAEPVETIFEEGEEFEVDF
EEFEDDLNDESEVFEENSEEDLENNSRGFRHCKHRTDKALEEQLI
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatattattattaaaggggcacgggaacacaacctgaaagatatcactgtggaa
ctcccgcgggacaaatttattgttattacaggagtttcgggttcaggaaaatctactctg
gcttttgatacaatttatgccgaagggcagcggcgctatgtggagtcactctcggcttat
gcgcggcaattcctcgggcttatgaacaagccggatgtagacagcattgagggattatct
cctgcgatttccattgaacagaaaactacatcaaaaaatcctcgaagtacggtcgggaca
gttacggaaatttacgactatctgaggctgcttttcgcaaggataggcacgccttactgc
ccgacccacaatataaaaatcgagtcccagtcccccgaaaagattgcggacagcctgagc
agggaatgcgagggcatgattactattctcgcgcctgtggtccggcaaaagaaagggact
taccagcatctcttcagggaactgaatagcgagggtttctcccggattagggtaaacggt
gagatccacaggactgacgatgagatcaccctcgaccgctacaaaaaacatgatattgaa
gttgtgattgatcggctggatccttctgaagaccgctcaaggctagtagaagcctgcgaa
aacgccctcaagaaggcagacgggcttttaatcgcggttgattcggaaggaaaagaccac
ctttattcctcaaatatggcatgtccgatctgcggtatggctttcgaagaactccagccc
aggatgttctccttcaacagtccctttggagcctgtgaagcctgtaacgggctcggtttc
aagatggaatttgacccggacctaattatcccgaataaaaaactctgtcttgcggacggg
gctgttgctctttacaggaattacctggacagctaccggagtcagcatctgggagctgtt
gcaaagcactttgggttcgatatttttaccccaattgaggctctcacagatgagcagtac
aatgtgcttatgtacggttcaaacgaacgaatgcagttcgaaatgagcatgaagaacgga
gatgcccactggtctcataaaggaacgtgggaaggactgattcctcagtctgagaggctg
tacagccagacaaaatccgaatacaggcgcaaggaacttgagaaattcatgcaggtcaag
ccctgcccgaaatgtgaaggcaggcgccttaaggaaaaagtgcttgcagtaaagctgggt
gaaaaatccattgtggacgtaaccgatctttcaattctggactgcatccgatttttcgaa
aaccttgatctctcggaaaaggaaagggagatagcaaagcaggttttaaaggaaattcga
tccaggcttggcttccttgagcatgtgggactcggctatctcacgctttcccgtagctca
ggcactctctcaggcggagaagcacagcgaatccgactggctacccagataggttcaaac
ctcatgggcgtgctctatgtgctggacgaaccctcaatagggctgcatcagagggacaat
gaaaggcttatccaaactctccagaccctgcgggaccttggaaatacccttatagtcgtg
gaacacgatgaagataccatccgggctgcggattatgtgctcgatataggaccaggggca
ggcattcacggaggttacgtggtagccaaaggtacgcctgaagaaatcgagctgaacaag
gaatccctgactggtcagtacctctcgggagaaaaacagataaaaccgcctgcttttcga
aggcagagtgattcgttcatcaggcttaaagggtgcagggcaaacaaccttaaggacata
gatgtgaatatcccgataggagtcctgaccgtggttacaggggtttcggggtctggaaaa
tccacacttatttatgatacactgtacaaagccctgacaaagaaaataaacaaatcaaat
gtaactccaggggagtatgacgagctggtttttgattccgaggtcgacaaggtaatcgtt
attgaccagagtcctatcggcaggactccccgttcgaaccctgcaacctataccaaagtc
tttgatgctatcaggcaggcttttgctgagacaaaggaagccaaaatccggggctataag
aacggacgcttctctttcaacgtaaaaggagggcgctgcgaagcctgccagggagatggg
atgataaaaatagagatgaacttcctgcctgatgtatacattgaatgtgaggagtgtaag
ggtacgcgctacaaccgggaaaccctcgaagtaaaatacaggggcaaatcgattgctgaa
gtcctggatatgactgtagaagaagctgccgagcatttcgagaatatacctgcaatcaaa
agcaaactcgataccctgacaagggtcgggcttggttacatcaaacttgggcagagctca
acaacgctttcaggcggggaagcccagagaattaaactgacaagagagctttctaaaaag
ggcactggaaggacaatttacctccttgacgaacccacaacagggctccacttccatgac
gtcaagaaactaattgcagtccttaatgggcttgtagcaaaaggaaataccgtggttgta
atcgagcataacatggacgtaattaaatccgcagactatatcatcgaccttggccctgaa
ggcggggatgcaggcggagagatcattgctgaaggaaccccagaggaagtggctctggtt
cagggaagccatacagcacgcttccttgcacccaggctttcaaacttatacctgagcatg
tcagaagcagagcctgttgagacaattttcgaagaaggagaagagtttgaggttgatttt
gaagagtttgaagatgatctgaatgatgagtccgaagtatttgaagaaaattctgaggaa
gatcttgaaaacaattccagaggattcaggcactgcaaacacagaaccgataaagcgctt
gaagaacagctaatttaa
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