Methanosarcina sp. 795: AAY43_12280
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Entry
AAY43_12280 CDS
T10855
Name
(GenBank) exonuclease
KO
K11600
exosome complex component RRP41
Organism
metw Methanosarcina sp. 795
Pathway
metw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAY43_12280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metw03019
]
AAY43_12280
Messenger RNA biogenesis [BR:
metw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AAY43_12280
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
AAY43_12280
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
WHD_MCM
Motif
Other DBs
NCBI-ProteinID:
ALK06315
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All DBs
Position
2860574..2862061
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AA seq
495 aa
AA seq
DB search
MSDKPEKLITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGKNKILVGVFGPREA
HPRRSQRADNAVIRYRYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVIMTELFPKTA
IDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGQIVLDLNKEEDNY
GEADFPVAMTQDGDITLLQMDGHLTPEEIKKGLELVKKGCKEILEIQRAVLRKKFETPVE
EPEEETEEAEIEAVEAEPSLEYAPEAAVVEEIIEEAGEFEEELSQETVEACAVDEEASEC
EKLEEIIKEAEAEVIEAEAIEEVIETEIEEEAEEEALEAETEFEAAFEASYEEFAESVVT
GKLCPEKTVSEKAELEPEIEEFAEEKPEIEEKPEIEEKPEIEEKPEIEEKPEIEEKPEIE
AKPEIEEKPEIEEEAGIEKAASEEAFESKPEIEPEAESREKAVEAEEVPVEEECKGPWKV
VKDPSESGSRGENYE
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataaacctgaaaaattaatcactgacgatgggctgcgccttgacgggaggcgt
gcggatgaaatcaggcccatgaaaattgaggtcggagtactctctagagccgacggttca
tgttatcttgaatgggggaaaaataaaattctcgtaggtgtattcggcccgagagaagcc
cacccccgccgttcacagcgtgcagataatgcagttatccgttatagatataatatggct
tctttttctgtggaagaccgtgcaagacccggaccaagcagacggagcattgaaatctca
aaagtttccagggaagcttttgaaccggtaattatgacagagctcttcccgaagaccgca
attgatatttttgtggaggtgcttcaggctgatgcgggaacaaggacagcagcaatcaat
gcctcaagcatagctcttgccgatgcaggcattccaatgaagggactgataacttcctgt
gcttttggaaaagttgacgggcagatagtactcgaccttaacaaggaagaggataattat
ggtgaggcggattttcctgttgcaatgactcaggatggagatattaccctgctccagatg
gacggacatctcactcccgaagaaatcaagaaaggtcttgaacttgtaaagaagggctgc
aaagaaattcttgaaattcagcgggcagtcctgagaaagaagtttgaaactcctgtcgag
gagcctgaagaagagaccgaagaggctgaaattgaagctgtggaagctgaaccttctctt
gaatacgctccggaagcagcggttgtagaagaaattattgaggaagccggggagtttgag
gaagagctttcccaggaaacggttgaagcctgtgctgttgatgaagaagcttccgagtgc
gaaaaactcgaagaaatcattaaagaggctgaggctgaagtaatagaagcggaagctata
gaagaagtaattgaaacagaaatcgaagaagaagctgaagaggaagctttagaagctgaa
actgagtttgaagctgcttttgaggcttcttatgaggaatttgccgagtctgtggtgact
ggaaaactttgtcccgaaaaaactgtttctgaaaaagcagaattagagcctgaaatcgag
gaatttgctgaagaaaaacccgagattgaggaaaaacctgagattgaggaaaaacctgag
attgaggaaaaacctgagattgaggaaaaacctgagattgaggaaaaacctgagatcgag
gcaaaacctgagattgaggaaaaacctgagattgaggaagaagccgggattgaaaaggct
gcttcagaagaagcttttgaatccaaaccagagatcgagcctgaagctgaatccagggaa
aaggcagtagaagccgaagaagtgcccgtagaagaggagtgcaaaggaccctggaaggta
gtgaaggatccctctgaatctggaagcagaggtgaaaactatgagtga
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