Methylobacterium sp. XJLW: A3862_09960
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Entry
A3862_09960 CDS
T05508
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
metx
Methylobacterium sp. XJLW
Pathway
metx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3862_09960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
metx03021
]
A3862_09960
03019 Messenger RNA biogenesis [BR:
metx03019
]
A3862_09960
Transcription machinery [BR:
metx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A3862_09960
Messenger RNA biogenesis [BR:
metx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A3862_09960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
NACHT
S1CSD-TOTE-2
AAA_25
AAA
AAA_14
Motif
Other DBs
NCBI-ProteinID:
AWV15791
LinkDB
All DBs
Position
2204659..2206008
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AA seq
449 aa
AA seq
DB search
MTPNPDALADIETAEPADAPTMPAALEGVREVKLQDLKSKTPTDLTAFAEEVEVENASTM
RKQELMFAILKQLAAKEVEIIGSGTVEVLQDGFGFLRSSDSNYLPGPDDIYISPTQIRRF
GLRTGDTVEGPIRGPKDGERYFALLKVNTINFENPEKIKHKVHFDNLTPLFPTKRFKLEL
DNPTKKDFSPRIIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAQSITLNHPECYLIVLLI
DERPEEVTDMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITR
LGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDE
VIFEEFKGTGNSEIILDRKVSDKRIFPAIDITRSGTRKEELLVPPDSLKKTYVLRRILNP
MGVTDAIEFLLDKLRQTKSNSDFFDSMNT
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgacgccaaaccccgacgccctcgccgacatcgagaccgcggagccggccgatgcgccc
accatgcccgccgccctcgagggcgtccgcgaggtcaagctccaggacctcaagtcgaag
acgcccaccgacctgacggccttcgccgaggaggtcgaggtcgagaacgcctcgaccatg
cgcaagcaggagctgatgttcgccatcctgaagcagctcgctgccaaggaggtcgagatc
atcggctcgggcaccgtcgaggtgctgcaggacggtttcggcttcctgcgctcctccgac
tcgaactacctgcccggccccgacgacatctacatctcgccgacccagatccgccgcttc
ggcctgcgcaccggcgacaccgtcgagggcccgatccgcggccccaaggacggcgagcgc
tacttcgcgctcctcaaggtcaacacgatcaacttcgagaacccggagaagatcaagcac
aaggtccacttcgacaacctgacgccgctcttcccgaccaagcggttcaagctcgagctg
gacaacccgaccaagaaggatttctccccgcggatcatcgacatcgtggcgccgatcgga
aagggccagcgcgccctgatcgtggcgccgccgcgcacgggtaagaccgtgctgatgcag
aacatcgcgcagtcgatcaccctcaatcaccccgagtgctacctgatcgtgctgctcatc
gacgagcggcccgaggaggtcaccgacatgcagcgctcggtgaagggcgaggtcatcgcc
tcgaccttcgacgagccggccacccgccacgtgcaggtcgccgagatggtgatcgagaag
gccaagcgcctcgtggagcacgggcgcgacgtcgtgatcctgctcgactcgatcacccgc
ctcggccgcgcctacaacaccgtggtgccgtcctccggcaaggtgctgaccggcggtgtc
gacgccaacgccctgcagcggcccaagcgcttcttcggcgcggcccgcaacatcgaggag
ggcggctcgctctcgatcatcgccaccgcgctcatcgacaccggctcgcgcatggacgag
gtgatcttcgaggagtttaagggcaccggcaactccgagatcatcctggaccgcaaggtc
tccgacaagcgcatcttcccggcgatcgacatcacccgctccggcacccgcaaggaggag
ctgctggtcccgccggattcgctcaagaagacttacgtgctgcgccgcatcctcaacccg
atgggcgtcaccgacgcgatcgagttcctgctcgacaagctgcgccagaccaagagcaac
agcgacttcttcgactcgatgaacacctga
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