Methylobacterium sp. XJLW: A3862_12280
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Entry
A3862_12280 CDS
T05508
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
metx
Methylobacterium sp. XJLW
Pathway
metx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
metx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A3862_12280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
metx03021
]
A3862_12280
03400 DNA repair and recombination proteins [BR:
metx03400
]
A3862_12280
Enzymes [BR:
metx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A3862_12280
Transcription machinery [BR:
metx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A3862_12280
DNA repair and recombination proteins [BR:
metx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A3862_12280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AWV19438
LinkDB
All DBs
Position
2694286..2698494
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNQQATPVSFDQIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHIELAAPVAHIWFLKS
LPSRIGLLLDMALKDLERILYFESYCVIEPGLTPLKERQLLSEEEYLRAQEEYGEDSFTA
MIGAEAIRRILQELDLDKIANDLREEIAVTTSELKPKKLLKRLKIIEAFQMSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIVAEGMPGEFKADNAKNPMQGVYG
DMGELEHALAAKAVSLHTKIKWRWTGIGPDNQPLTKTYETTPGRVILSGALPKHAKVPFE
VVNKLMTKKEISAMIDTVYRHCGQKESVIFCDRIMALGFNHAFKAGISFGKDDMVVPENK
WSIVDTTRALVKDYEQQYNDGLITQGEKYNKVVDAWAKCSDKLAAEMMGRISAVQKDEHG
ADKQINSIYMMSHSGARGSPAQMKQLAAMRGLMAKPSGEIIETPIISNFKEGLDVLEYFN
STHGARKGLADTALKTANSGYLTRRLVDVAQDAVIREVDCGTTNGIKMRAIVDAGQVVAT
LATRILGRATAEDLVAADGTVIVKTGETIEERHLPAINTAGIQEVKIRSVLVCATKSGVC
ATCYGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADSSFIESSFEG
TIKIRNRAVAKNTDGDLIATGRNVAVVIVGSDGVERAVHRLQYGAKLRVDEGDKIKRGQR
IAEWDPYTRPILTEVDGLVAYEDLVDGQSMTETTDESTGIAKRVVVDWRGSARTSDLKPA
MVVVDREGKALKLPRGSDARYFLPVDAIIGFDPGATVKAGDILARVSTDSAKTRDITGGL
PRVAELFEARRPKDAAIIAEKSGTIAFGRDYKNKRRLTLTPHDGSEAVEYLIPKGKHIHL
QDGDVVELGDYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVSINDKHIEVIVR
QMLQKVEVTDGGDSDILSGDQIDRTELTEFNEKLLAEGKKPIQGVPVLLGITKASLQTKS
FISAASFQETTRVLTEAAVNGKVDTLEGLKENVIVGSLIPAGTGSMVADIRSIARRRDAM
ILQQKQTESGAMPVEELPPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaaccagcaggccacgccggtcagcttcgatcag
atcaagatctcgatctcgtccccggagaagatcctctcctggtcgtacggcgagatcaag
aagcccgagaccatcaactaccggaccttcaagcccgagcgcgacggcctgttctgcgcg
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgtgagaagtgcggcgtcgaggtcaccctcgcgcgcgtccggcgc
gaccgcatgggccatatcgagctggccgcccccgtcgcgcatatctggttcctgaagtcg
ctgccctcgcgcatcggcctgctgctcgacatggcccttaaggacctcgagcggatcctg
tacttcgagtcctactgcgtcatcgagccgggcctcacccccctgaaggagcgtcagctc
ctgtcggaggaggagtacctgcgcgcccaggaggagtacggcgaggactcgttcaccgcc
atgatcggcgccgaggccatccggcgcatcctgcaggaactcgacctcgacaagatcgcc
aacgatctgcgcgaggagatcgcggtcacgacgtcggagctgaagcccaagaagctcctg
aagcggctcaagatcatcgaggccttccagatgtccggcaacaagccggaatggatgatc
ctcacggtcgtcccggtgatcccgccggacctgcgcccgctggtcccgctggacggcggc
cgcttcgcgacctccgacctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgagctgcgcgcgcccgacatcatcatccgcaacgagaagcggatg
ctgcaggaggcggtcgacgccctgttcgacaacggccgccgcggccgcgtcatcacgggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgattattcaggccgctcggtcatcgtggtcggc
ccggagctgaagctgcaccagtgcggtctgcccaagaagatggcgctggagctgttcaag
ccgttcatctacgcgcgcctcgacgccaagggcttttcggccaccgtcaagcaggccaag
aagctggtcgaaaaggagaagccggaggtctgggacatcctcgatgaggtgatccgcgag
cacccggtgatgctgaaccgcgcgccgacgctgcaccgcctcggcatccaggccttcgag
ccgaagctgatcgagggcaaggcgatccagctgcacccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaggcgcagctg
gaagcgcgcgtcctcatgatgtcgaccaacaacatcctgcacccggccaacggtcagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctctactacctgtcgatcgtggccgag
ggcatgccgggcgagttcaaggcggacaacgccaagaacccgatgcagggcgtctacggc
gacatgggcgagctggagcacgccctggccgccaaggccgtgtcgctgcacaccaagatc
aagtggcgctggaccggcatcggcccggacaatcagcccctgaccaagacctacgagacc
acgcctggccgggtgatcctgtccggtgccctgccgaagcacgccaaggtgcccttcgag
gtcgtcaacaagttgatgaccaagaaggagatctcggcgatgatcgacaccgtctaccgc
cactgcggtcagaaggagtcggtgatcttctgtgaccggatcatggcgctcggcttcaac
cacgcgttcaaggccggcatctcgttcggcaaggacgacatggtcgtgccggagaacaag
tggtcgatcgtcgacacgacccgcgcgctcgtgaaggattacgagcagcagtacaacgac
ggcctgatcacgcagggcgagaagtacaacaaggtggtggatgcctgggccaagtgctcg
gacaagctggccgccgagatgatgggccgcatctccgcggtccagaaggacgagcacggc
gccgacaagcagatcaactcgatctacatgatgagccactccggcgcccgtggttcgccc
gcccagatgaagcagctcgcggcgatgcgcggcctcatggccaagccgtcgggcgagatc
atcgagaccccgatcatctcgaacttcaaggaaggcctggacgttctggagtacttcaac
tccacgcacggtgcccgtaagggcctggccgacaccgccctgaagaccgccaactccggc
tacctgacccgccgtctcgtcgacgtggcgcaggatgcagtcatccgcgaggtggattgc
ggcacgaccaacggcatcaagatgcgcgccatcgtggatgccggtcaggtcgtggcgacg
ctggccacccgcatcctgggccgcgccacggccgaggatctcgtggccgcggacggcacg
gtgatcgtcaagaccggcgagaccatcgaggagcggcacctgccggcgatcaacaccgcc
ggcatccaggaggtgaagatccgctcggtgctggtctgcgccaccaagagcggcgtctgc
gccacctgctacgggcgcgacctcgcccgcggcacgcccgtcaacatgggcgaggccgtc
ggcgtcatcgcggcgcagtcgatcggcgagccgggcacgcagctcacgatgcgcaccttc
cacatcggtggtgcggcccagatcgccgactcgtccttcatcgagtcgagcttcgaaggc
acgatcaagatccgcaaccgcgccgtcgccaagaacacggacggggacctgatcgccacc
ggccgcaacgtggcggtcgtgatcgtggggtcggacggcgtcgagcgggcggtccaccgc
ctgcaatacggcgccaagctccgggtcgacgagggtgacaagatcaagcgcgggcagcgg
atcgccgagtgggatccctacacccgtccgatcctcaccgaagtcgacggcctcgtggcc
tacgaggatctggtcgacggccagtccatgaccgagaccaccgacgagtcgaccggcatc
gccaagcgcgtcgtcgtcgactggcgcggctcggcccggacctcggacctgaagcccgcg
atggtcgtggtcgatcgggagggcaaggcgctcaagctgccgcgcggctcggacgcccgc
tacttcctgccggtcgacgccatcatcggcttcgatccgggcgcgacggtcaaggccggc
gacatcctggcccgcgtctcgaccgactcggccaagacccgcgacatcaccggcggtctg
ccgcgggtggcggagctgttcgaggcacggcgcccgaaggacgcggcgatcatcgccgag
aagtcgggcaccatcgcgttcggccgcgactacaagaacaagcgtcggctcacgctgacg
ccgcatgacggctcggaggcggtcgagtacctgatcccgaagggcaagcacatccacctg
caggacggggacgtggtggagctcggcgactacatcgtcgacggaaacccggctccgcac
gacatcctggcgatcaagggcgtcgaggaactcgccgcctacctcgtcaacgagatccag
gaggtctaccggctgcagggcgtgtcgatcaacgacaagcacatcgaggtgatcgtccgt
cagatgctgcagaaggtcgaggtgaccgatggcggcgactcggacatcctctcgggcgac
cagatcgaccggacggagctgaccgagttcaacgagaagctgctcgccgagggcaagaag
ccgatccagggcgttccggtcctgctcggtattaccaaggcgtcgctgcagacgaagtcg
ttcatctcggcggcctcgttccaggagaccacccgcgtcctcaccgaggcggcggtcaac
ggcaaggtcgacaccctggaaggcctgaaggagaacgtgatcgtcggatcgctgatcccg
gccggcaccgggtcgatggtggcggatatccgctccatcgcccgccgccgcgacgcgatg
atcctgcagcagaagcagaccgagagcggcgcgatgccggtcgaggagcttccgcccgcc
gccgaataa
DBGET
integrated database retrieval system
