Methylobacterium sp. XJLW: A3862_24965
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Entry
A3862_24965 CDS
T05508
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
metx
Methylobacterium sp. XJLW
Pathway
metx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3862_24965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metx03019
]
A3862_24965
03400 DNA repair and recombination proteins [BR:
metx03400
]
A3862_24965
Enzymes [BR:
metx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A3862_24965
Messenger RNA biogenesis [BR:
metx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3862_24965
DNA repair and recombination proteins [BR:
metx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A3862_24965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AWV18369
LinkDB
All DBs
Position
5531007..5532848
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AA seq
613 aa
AA seq
DB search
MTRLDEARAALKKTFGYEDFRPGQDEVIGAVLDGADVFAVMPTGSGKSMTYQLPALVEPG
LTVVVSPLIALMHDQVQQMKSVGIEAATLNSTVAETESRETWRSLRSGDLRLLFVSPERL
LMEGCIEALRGAGVRRLAVDEAHCVSQWGHDFRPEYREIARARVALGNIQTLALTATADA
ATRAEIAERLFPQDRPPKIFVHSFDRPNIRLTFQPKDNPARQIERFLKHRRAESGIIYCS
SRKRVEQLAETLKKDGFDALPYHAGLDQGTRMRNQDRFLQEDGVVMTATIAFGMGINKPD
VRFVCHADMPNNVEGYYQEIGRAGRDGLPADTLTLYGLDDMALRRRQIDEKEISDERRRV
ERRKLEAMITLCEGATCRRQSLLAYFGEASGPCGRCDLCRGGVTLVDGTVSAQKILSAIV
RTGQRFGAAYICDVVHGKESEQIRRNGHASLKTFGVGADKPVAAWRAILRQLFAAGAIAE
NADGFGGLSMTEKGEAILFGREPVQLRPDPEPKAESRERRRPASREDGEIALSEADEALF
QHLRGLRATLARAEGIAAFMVFPDRTLIEMARQKPVDLWALRTVHGVGERKREAYGDKFV
AAIADFLAHPPAA
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgacccgcctcgacgaggcccgcgccgcgctcaagaagaccttcggctacgaggatttc
cggcccgggcaggacgaggtgatcggcgcggtgctggacggcgccgacgtgttcgccgtg
atgcccaccggctccggcaagtcgatgacctaccagctccccgccctggtcgagcccggt
ctgaccgtcgtggtctcgccgctgatcgcgctgatgcacgatcaggtgcagcagatgaag
agcgtcggcatcgaggccgccaccctcaactcgacggtggcggagacggagtcccgcgag
acctggcggtccctgcgctcgggcgacctccgtctcctgttcgtgtcccccgagcgcctg
ctgatggagggctgcatcgaggccctgcgcggggccggggtccggcggctcgcggtggac
gaggcgcattgcgtctcgcaatggggccacgatttccggcccgagtaccgggagatcgcc
cgggcccgggtggcgctgggcaacatccagaccctggcgctcaccgccaccgccgatgcc
gcgacccgcgcggagatcgccgagcggctgttcccgcaggaccggcccccgaagatcttc
gtccactccttcgaccggccgaacatccggctgaccttccagcccaaggacaacccggcc
cggcagatcgagcggttcctgaagcatcggcgggcggagagcgggatcatctactgctcc
tcgcgcaagcgcgtcgagcaactggccgagaccctcaagaaggacgggttcgacgccctg
ccctaccatgccggcctcgaccagggcacgcgcatgcgcaaccaggaccggttcctgcag
gaggacggggtggtgatgaccgccaccatcgccttcggcatgggcatcaacaagcccgac
gtgcgcttcgtctgccacgccgacatgcccaacaacgtcgagggctactaccaggagatc
ggccgcgccggccgcgacgggctgcccgccgacacgctgaccctctacggcctcgacgac
atggcgctgcgccgccgccagatcgacgagaaggagatctccgacgagcgccgccgggtc
gagcggcgcaagctcgaggcgatgatcaccctgtgcgagggcgccacctgccgccgccag
tcgctgctcgcctatttcggcgaggcgagcggcccttgcggccgctgcgacctgtgccgc
ggcggcgtcaccctcgtggacgggacggtctcggcgcagaagatcctctcggccatcgtg
cgcaccggccagcgcttcggcgcggcctatatctgcgacgtggtccacgggaaggagagc
gagcagatccgccgcaacggccacgcgagcctcaagaccttcggggtcggcgccgacaag
ccggtggccgcgtggcgggcgatcctgcgccagcttttcgcggccggggcgatcgccgag
aacgccgacggcttcggcggcctgtccatgaccgagaagggcgaggcgatcctgttcggc
cgggagccggtccagctccgcccggatccggagccgaaggccgaatcccgcgagcgacgc
cggcctgcatcccgcgaggacggcgagatcgccctctcggaggccgacgaggcgctgttc
cagcacctgcgcggcctgcgcgccacgctggcccgggccgagggcatcgcggccttcatg
gtcttccccgatcgaacgctgatcgagatggcccgccagaagcccgtcgacctctgggct
ctacgcacggtccacggggtcggcgagcgcaagcgcgaggcctacggcgacaagttcgtg
gcggcgatcgccgatttcctggcccatccgccggccgcgtga
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