Phytobacter sp. MRY16-398: MRY16398_06080
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Entry
MRY16398_06080 CDS
T05735
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mety
Phytobacter sp. MRY16-398
Pathway
mety03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mety00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MRY16398_06080 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mety03019
]
MRY16398_06080 (deaD)
03009 Ribosome biogenesis [BR:
mety03009
]
MRY16398_06080 (deaD)
Enzymes [BR:
mety01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MRY16398_06080 (deaD)
Messenger RNA biogenesis [BR:
mety03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MRY16398_06080 (deaD)
Ribosome biogenesis [BR:
mety03009
]
Prokaryotic type
rRNA helicases
MRY16398_06080 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
BBE75552
UniProt:
A0A348D7T5
LinkDB
All DBs
Position
638846..640765
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AA seq
639 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAEIPDG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD
LETLAAALLKMAQGERALIVPPDAPMRPKREFRERDDRFERRGDRNDRGPRGDRPERGGE
DRPRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPERRGGGERREGGRSFGGGERREGGRS
FGGERREGGRSEGRNFSGERRAPRRDREEGSSRRRFGDA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctg
ctgggcggtcgcgacgtactgggtatggcccagacgggtagcggcaaaaccgcagcgttt
tcattaccgctgctgaacaatcttgatcctgagctgaaagcaccgcaaatcctggtgctg
gcgccgacccgcgaactggcggttcaggttgccgaagccatgacagatttctctaaacac
atgcgcggcgtgaacgtggttgccctttatggcggccagcgttatgacgtgcagttacgc
gccctgcgtcaagggcctcagattgttgtcggtaccccgggtcgtctgcttgaccacctg
aaacgcggtacgctggatctctctaaactgagcggtctggtgctggacgaagccgatgaa
atgttgcgtatgggcttcatcgaagacgttgaaaccatcatggcagagatcccggacggt
catcagaccgcactgttctctgcaaccatgccggaagcgattcgccgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcaatccagcgtgactactcgcccggacatc
agccagagctactggtctgtgtacggcatgcgtaaaaacgaagcgctggtacgtttcctg
gaagcagaagattttgatgcggcgatcatcttcgttcgtaccaaaaacgcgaccctggaa
gtggcagaagcgctggagcgtagcggctataacagcgccgcgctgaatggcgacatgaac
caggccctgcgtgagcagactctggagcgtctgaaagacggtcgtctggatatcctgatt
gcaaccgacgtggcagcacgtggtctggacgttgagcgtatcagcctggttgttaactat
gacatcccgatggattccgagtcttacgttcaccgtatcggccgtaccggtcgtgcaggt
cgcgctggtcgtgcgttgctgtttgttgagaaccgcgaacgtcgtctgctgcgtaacatc
gaacgcaccatgaagctgactattcctgaagtagaactgccgaacgcagaactgctgggc
aaacgccgtctggaaaaattcgccgcgaaagtacagcagcagctggaaagcagcgatctg
gatcagtaccgtgctctgctggcgaaaatccagccgtctgcggaaggtgaagagctggat
ctcgaaacgctggccgctgctctgctgaaaatggcacagggtgaacgtgcgctgatcgtt
ccgccagacgcgccgatgcgtcctaagcgtgaattccgtgagcgtgacgaccgctttgaa
cgccgtggcgatcgtaacgaccgtggtccgcgtggtgaccgtcctgagcgtggtggtgaa
gatcgtccgcgtcgtgaacgtcgtgatgctggcgaaatggaactgtaccgtattgaagtt
ggccgtgatgatggtgttgaagttcgtcatatcgttggcgcgattgctaacgaaggcgac
atcagcagccgttatatcggtaacatcaagctgttcggtacccactctaccatcgaactg
ccgaaaggcatgccgggcgaagtactgcagcactttactcgcacccgcatcctgaacaag
ccgatgaacatgcagcttctgggtgatgcacagccgcgtcctgagcgtcgtggcggtggt
gagcgtcgcgaaggtggccgcagcttcggtggtggtgaacgccgtgaaggtggtcgcagc
ttcggtggtgagcgtcgtgaaggcggtcgtagcgaaggtcgtaacttcagtggcgaacgt
cgcgctccgcgtcgtgaccgcgaagaaggctccagccgtcgtcgtttcggtgacgcataa
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