Phytobacter sp. MRY16-398: MRY16398_09260
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Entry
MRY16398_09260 CDS
T05735
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mety
Phytobacter sp. MRY16-398
Pathway
mety03410
Base excision repair
mety03430
Mismatch repair
mety03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mety00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MRY16398_09260
03430 Mismatch repair
MRY16398_09260
03440 Homologous recombination
MRY16398_09260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mety03400
]
MRY16398_09260
DNA repair and recombination proteins [BR:
mety03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MRY16398_09260
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MRY16398_09260
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MRY16398_09260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PEP-utilizers
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
BBE75870
UniProt:
A0A348D8Q3
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All DBs
Position
968659..970392
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AA seq
577 aa
AA seq
DB search
MKAEIRLRRREANDAADLPADLPPLLRRLYASRGVCSAADLERGVKGMLPWQRLHGIDKA
VEILYNALREGLRIVVVGDFDADGATSTALSVLALRALGGTNIAYLVPNRFEDGYGLSPE
VVDQAHARGAQLILTVDNGISSHAGVERAHALGIPVVVTDHHLPGETVPNAEAIINPNLR
ECDFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGLAIPNLAELLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLSDNLGEARVLASELDALNQTRKEIEQGMQAEALTLCEKLERSRDTLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP
GLMLKFGGHAMAAGLSLEEARFEEFQRYFGELVTEWLDPALLQGEIVSDGLLKPDEMTLD
TAEMLRDAGPWGQMFPEPLFDGEFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTT
CWPDNGVRVVNIAYKLDVNEFRGNRSVQLIIDHLWPI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagccgaaattcgacttcgccgccgcgaggcaaacgacgcggcggatttacctgcc
gatcttcccccacttctgcgtcgcctttatgccagccgcggtgtttgtagcgcggcggat
ctggagcgcggggtgaaaggcatgctgccctggcagcggctgcatggcatcgataaagcg
gtagagatcctctataacgccttgcgcgaggggttgcgtattgtggttgtcggtgatttt
gatgccgacggcgcaaccagtaccgcactgagtgtgctggccttacgtgcgctgggcggc
actaatatcgcctacctggtgccgaaccgttttgaagacggctacgggttaagtccggaa
gtggtggatcaggcacacgcacgcggcgcgcaactgatcctgaccgtggataacggtatt
tcgtcacatgccggggttgaacgggcacatgcgctcggcattccggtggtggtcaccgac
caccatcttcccggcgaaacagtgcccaatgccgaagccatcatcaacccgaacctgcgc
gaatgcgattttccgtcgaagtcactggcgggggtgggtgtggccttctatctgatgctg
gcactgcgaacttttttacgcgacaaaggctggtttgatgagcgcgggctggctatccct
aatctggcggaactgcttgatttagtggccttaggtaccgttgccgatgtcgtgccgctg
gatgccaacaaccgcattctgacctggcagggcttaagccgcattcgtgccggaaagtgc
cgtcctggcatcaaagcgctcctggaagtcgccaaccgcgacgcacaaaaactggcggcc
agcgatttaggttttgcgcttggcccacgtctgaatgccgcaggtcgtctggacgatatg
tccgttggcgtggcgctattgctcagtgacaaccttggcgaagctcgggtgctggccagc
gaacttgatgcgctaaaccagacgcgcaaagagattgagcagggcatgcaggcagaggcg
ttgacgctgtgcgagaagctggaacgtagccgcgataccctgccgggtggtcttgctatg
tatcatcccgaatggcaccagggggtagtggggattctggcgtcgcgtattaaagagcgt
ttccaccgcccggttatcgcgtttgcgcctgccggggatggcactttaaaaggctcagga
cgctcaatccagggccttcacatgcgcgatgcgctggagcgtctggatacactctaccca
gggctgatgctcaaattcggcggccatgccatggcggcggggctgtcgcttgaggaggct
cgcttcgaggagttccagcgctactttggcgagctggtcaccgagtggctggatccggca
ctgttgcaaggtgaaatcgtttctgatggcctgttaaaacctgatgaaatgaccctcgat
acagccgaaatgttgcgcgatgccggcccctgggggcagatgttcccggaaccgctgttt
gatggcgaatttcgtcttctgcaacaacggctggtgggggagcgccatctgaaagtgatg
gttgaaccggtcggcggcggcccgctgctcgacggtatcgcttttaatgtcgacaccacc
tgctggcctgataacggcgtgcgcgtcgtcaatatcgcttataaactggatgtgaatgag
tttcgcggcaatcgcagcgtgcaattaatcattgatcacctgtggccaatttaa
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