Phytobacter sp. MRY16-398: MRY16398_30550
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Entry
MRY16398_30550 CDS
T05735
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mety
Phytobacter sp. MRY16-398
Brite
KEGG Orthology (KO) [BR:
mety00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mety03032
]
MRY16398_30550 (topA)
03400 DNA repair and recombination proteins [BR:
mety03400
]
MRY16398_30550 (topA)
Enzymes [BR:
mety01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MRY16398_30550 (topA)
DNA replication proteins [BR:
mety03032
]
Prokaryotic type
DNA Topoisomerases
MRY16398_30550 (topA)
DNA repair and recombination proteins [BR:
mety03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MRY16398_30550 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
DUF4795
Motif
Other DBs
NCBI-ProteinID:
BBE77999
UniProt:
A0A348DET2
LinkDB
All DBs
Position
complement(3169593..3172190)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAPKKSADSASTKTAKKPK
KDERGALVNRMGIDPWHNWDAHYEVLPGKEKVVSELKSLAEKADHIYLATDLDREGEAIA
WHLREVIGGDETRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWEVDANAATPGGDSLPLQVTH
EGDKPFRPVNREQTMAAVSLLEKARYTVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVSMVRTFIGDKYGKKYLPENANQYASKEN
SQEAHEAIRPSDVGVEADALKDMETDAQKLYQLIWRQFVACQMTPAQYDSTTITVGAGDY
RLKARGRILRFDGWTKVMPALRKGDEDRTLPAVNTGDVLSLIDLTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMEDRLDQVANHEAEWKKVLDSFFGDFSRQLDQAERDPDEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCTKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPVVECEKCGSEMHL
KMGRFGKYMACTNDDCKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPEGNKTIVRFSRKTKQQYV
ASEKDGKATNWSAFYVDGKWAEAKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtcatcgttgagtccccggcaaaagccaaaacgatcaataagtat
ctgggtaatgactacgtggtgaaatccagcgtaggtcatatccgcgatttgccgaccagt
ggctcagcacctaaaaagagcgctgactctgcctccaccaaaacggctaagaagcctaaa
aaggatgaacgcggcgctctcgtcaatcgcatgggcattgacccatggcacaactgggat
gcgcactatgaagtgctgcccggaaaagagaaggtggtttctgagctgaaatcgctcgct
gaaaaagccgaccatatctatctcgcaaccgaccttgaccgcgaaggggaagccattgca
tggcacctgcgggaagtgatcggtggcgatgaaacgcgctatagccgcgtggtgtttaac
gaaatcaccaaaaatgcgattcgccaggcgttcgaaaagccgggcgagctgaacattgat
cgtgtgaatgcccagcaggcgcggcgctttatggaccgcgtagtgggttacatggtttct
ccactgttgtggaagaagattgcccgtggcctgtccgctggccgagtacagtcggttgct
gtgcgtctggtagttgagcgtgaacgtgaaattaaagccttcgttccggaagagtactgg
gaagttgacgctaatgccgcaacgccgggtggcgattctctgccactccaggtgacgcac
gaaggggataaacctttccgtccggttaaccgcgaacaaacgatggcggcagttagcctg
ctcgaaaaagcccgttacacggtccttgagcgcgaagacaagccgaccagcagcaagcca
ggcgcaccatttattacttccacattgcagcaggcggcaagtactcgtcttggcttcggc
gtgaagaaaaccatgatgatggcccagcgtctgtacgaagcaggttacatcacttatatg
cgtactgactccaccaacctgagtcaggatgcggtcagcatggtgcgtacctttattggt
gataagtacggcaaaaaatatctgccggaaaatgccaaccagtacgccagcaaagagaac
tcccaggaagcgcacgaagcgattcgtccctccgatgttggggttgaggctgacgccctt
aaagatatggaaactgatgcgcagaaactgtatcaactgatctggcgccagtttgtcgcc
tgtcagatgacgccggcgcaatacgactccaccactattaccgtgggcgcgggtgattat
cgcctgaaagcacgcggtcgcattttgcgtttcgatggctggacgaaggtgatgccagcg
ctgcgtaaaggcgatgaagaccgtacgctgccagcggtaaacacgggtgatgtcctgtcg
cttattgatctgacacctgctcagcacttcaccaaaccgcctgcgcgctttagtgaagcg
tcgctggttaaagagctggaaaaacgtggtattggccgtccgtcaacgtatgcgtcgatc
atttcgaccattcaggaccgtggctatgtgcgcgtggaaaaccgtcgcttctatgcggaa
aaaatgggtgaaattgttaccgaccgtctggaagagaacttccgtgagttgatgaattac
gatttcaccgcgcagatggaagaccgtctcgaccaggtggcaaaccacgaagcggaatgg
aagaaggtgctggacagtttcttcggcgatttctcccgccaacttgaccaggcggaaaga
gatccggatgaaggcggcatgcgcccgaatcagatggtgcttaccagcattgattgcccg
acttgcggtcgtaagatggggatccgtaccgccagtaccggggtgttcctcggttgctcc
ggttatgcactttcaccaaaagagcgctgcaaaaccaccattaacctggtgccggaaaac
gaagtattgaacgtgctggaaggcgacgacgcggaaaccaatgcgttgcgcgccaaacgc
cgttgtacaaagtgcggtacggcgatggacagctacctgatcgatccgaaacgtaaacta
catgtttgcggtaataacccgacctgtgacggttatgaaatcgaagagggcgagttccgc
atcaaaggttatgacggtccggtggttgagtgtgaaaaatgtggctctgaaatgcacctg
aaaatgggacgtttcggtaagtacatggcctgtaccaacgacgactgcaaaaacacgcgt
aagatcctgcgtaatggcgaagtcgcgccaccgaaagaagatccggttccgttgccggaa
ctgccgtgcgaaaaatcggacgcgtatttcgttctgcgtgacggcgcagccggggttttc
ctcgcggctaacaccttcccgaaatcgcgcgaaacgcgtgcaccgttagtggaagagtta
tatcgcttccgcgaccgtttgccggaaaaactgcgttatctggcggatgcgccgcaacag
gatccggaagggaataagaccattgtccgttttagtcgtaaaacgaaacagcagtatgtt
gcgtcggaaaaagacggcaaagcgacaaactggtcggcgttttacgttgatgggaaatgg
gcagaagccaaaaaataa
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