KEGG   Phytobacter sp. MRY16-398: MRY16398_47020
Entry
MRY16398_47020    CDS       T05735                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
mety  Phytobacter sp. MRY16-398
Pathway
mety00010  Glycolysis / Gluconeogenesis
mety00020  Citrate cycle (TCA cycle)
mety00260  Glycine, serine and threonine metabolism
mety00280  Valine, leucine and isoleucine degradation
mety00310  Lysine degradation
mety00380  Tryptophan metabolism
mety00620  Pyruvate metabolism
mety00630  Glyoxylate and dicarboxylate metabolism
mety00640  Propanoate metabolism
mety00670  One carbon pool by folate
mety00785  Lipoic acid metabolism
mety01100  Metabolic pathways
mety01110  Biosynthesis of secondary metabolites
mety01120  Microbial metabolism in diverse environments
mety01200  Carbon metabolism
mety01210  2-Oxocarboxylic acid metabolism
mety01240  Biosynthesis of cofactors
Module
mety_M00009  Citrate cycle (TCA cycle, Krebs cycle)
mety_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
mety_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
mety_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:mety00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    MRY16398_47020 (lpdA)
   00020 Citrate cycle (TCA cycle)
    MRY16398_47020 (lpdA)
   00620 Pyruvate metabolism
    MRY16398_47020 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    MRY16398_47020 (lpdA)
   00640 Propanoate metabolism
    MRY16398_47020 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    MRY16398_47020 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    MRY16398_47020 (lpdA)
   00310 Lysine degradation
    MRY16398_47020 (lpdA)
   00380 Tryptophan metabolism
    MRY16398_47020 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    MRY16398_47020 (lpdA)
   00670 One carbon pool by folate
    MRY16398_47020 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mety04147]
    MRY16398_47020 (lpdA)
Enzymes [BR:mety01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     MRY16398_47020 (lpdA)
Exosome [BR:mety04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   MRY16398_47020 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 FAD_oxidored GIDA FAD_binding_2 HI0933_like NAD_binding_8 Thi4 FAD_binding_3 AlaDh_PNT_C DAO FMO-like Lycopene_cycl
Other DBs
NCBI-ProteinID: BBE79646
UniProt: A0A348DJH9
LinkDB
Position
complement(4901242..4902666)
AA seq 474 aa
MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVA
KVIEEAKALATHGIVFGEPQTDIDKIRTWKEKVITQLTGGLAGMAKGRKVKVVNGLGKFT
GANTLEVEGENGKTVINFDNAIIAAGSRPIELPFIPHEDPRVWDSTDALELKTVPKRLLV
MGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISQKFNLMLETKVTA
VEAKEDGIYVSMEGKKAPAEAQRYDAVLVAIGRVPNGKLLDAGQAGVEVDERGFIRVDKQ
LRTNVPHIYAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWV
GLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKETHRVIGGAIVGTNGGE
LLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK
NT seq 1425 nt   +upstreamnt  +downstreamnt
atgagtactgaaatcaaaactcaggtcgtggtacttggggcaggcccggcaggttactct
gctgccttccgttgcgctgatttaggtctggaaaccgtcatcgtagaacgttacaacacc
ctcggcggtgtttgtctgaacgtcggttgtatcccttctaaagcgctgctgcacgtagcg
aaagttattgaagaagctaaagcgctggcgactcacggtatcgtatttggtgagccgcag
actgatatcgataaaatccgtacctggaaagagaaagttatcactcaactgaccggcggc
ctggcaggcatggcgaaaggtcgtaaagttaaagtggtcaacggtctgggtaaattcacc
ggtgcgaacaccctggaagttgaaggcgaaaacggcaaaaccgtgatcaatttcgacaac
gctatcatcgcagcgggttcccgtccgatcgaactgccgtttattccgcatgaagatccg
cgcgtatgggactccaccgatgcactggagctgaaaaccgttcctaaacgtctgctggtt
atgggcggcggtatcatcggcctggaaatgggtaccgtttaccatgcgctgggttcacag
attgacgtggttgaaatgttcgaccaggttatcccggctgccgataaagatatcgtgaaa
gtcttcaccaaacgcatcagccagaaattcaacctgatgctggaaaccaaagtgactgcc
gttgaagcgaaagaagacggtatttacgtttccatggaaggcaaaaaagcgcctgccgaa
gcacagcgttatgatgcagtgctggtcgctatcggtcgtgtaccgaacggtaaactgctg
gacgcaggccaggcgggtgttgaagttgacgagcgtggctttatccgcgttgacaaacaa
ctgcgtaccaacgtaccgcacatctatgctatcggcgatatcgtcggtcagccgatgctg
gcgcacaaaggtgttcatgaaggtcacgttgctgccgaagttatcgctggcaaaaaacac
tacttcgatccgaaagttatcccgtctatcgcatacaccgagccagaagttgcatgggtt
ggtctgactgagaaagaagcgaaagagaaaggcatcagctacgaaaccgccaccttcccg
tgggctgcttctggccgtgctattgcttctgactgcgcagacggtatgaccaaactgatt
ttcgacaaagagactcaccgcgtcatcggtggtgcgattgtcggtaccaacggcggcgag
ctgctgggtgaaatcggtctggctatcgaaatgggctgtgacgcagaggacatcgcgctg
actatccacgcgcacccgacgctgcacgagtctgttggcctggctgccgaagtgttcgaa
ggtagcatcaccgacctgccgaacccgaaagcgaagaaaaaataa

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