Methanothermobacter sp. MT-2: METMT2_0142
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Entry
METMT2_0142 CDS
T05694
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
metz
Methanothermobacter sp. MT-2
Brite
KEGG Orthology (KO) [BR:
metz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
metz03016
]
METMT2_0142
Enzymes [BR:
metz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
METMT2_0142
Transfer RNA biogenesis [BR:
metz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
METMT2_0142
Prokaryotic type
tRNA splicing ligases
METMT2_0142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAW30844
LinkDB
All DBs
Position
complement(152649..154097)
Genome browser
AA seq
482 aa
AA seq
DB search
MDVKDILIKVRESVWEVPTDYKKCMRVPGRIFLDEEALKDLEIGAVDQVANVACLPGIQK
FSIGLPDIHFGYGFSIGGVAAFDARNGVISPGGVGFDINCGVRLIKTNLDHEEAQPKIKE
LIDTLFMNVPSGVGSKGKIRLKRGQIDEVLDNGAEWAVENGYGWEKDLERLEENGKMEDA
NSEKVSEKAKKRGIPQLGSLGSGNHFLEVQKIDKIFDQKAAEVYGLEEGKVTVLIHTGSR
GCGHQICSDYLRVMDKAYKKYNIRIPDRQLACAPVDSQEAIEYFQAMSAAANYAWANRQM
IVHWVRESFEQVFKTSAEDLEMDIVYDVAHNIAKKETHPIKGLKREVYVHRKGATRAFGP
GRKEIPPEYRKIGQPVIIPGTMGTSSYVLHGTETAMEETFGSTAHGAGRKMSRAGAKRTY
RGEKVQRNLLGRGIYVRATSMPVIAEEAPGAYKDVDMVVNTSHKTGISRLVAKMIPLGVA
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaaggatatactaataaaagttagagaatcggtatgggaagtccccacagac
tataaaaagtgtatgcgcgtaccaggacgaatattcctagatgaagaggcattaaaagac
cttgaaataggtgctgttgaccaagttgccaatgtagcatgcctaccaggcatacaaaaa
ttctcaataggactaccagacatacacttcggctacggcttcagcataggaggcgtggcc
gcattcgacgcccgaaacggagtcataagcccaggcggggttggattcgacataaactgc
ggggtcagactaataaaaacaaacctagaccacgaagaagcacaaccaaaaataaaagaa
ctcatagacaccctattcatgaacgtgccatcaggagtgggcagcaaaggcaaaataaga
ctaaaaagaggtcaaatagatgaagtgctagacaacggggctgaatgggctgttgaaaac
ggctacggatgggaaaaagacctagaacgccttgaggaaaatggtaaaatggaagacgcc
aactcagagaaagtaagcgaaaaagcaaaaaagaggggcataccccaactaggctcacta
ggctcaggcaaccacttcctagaagtccaaaaaatagataaaatcttcgaccaaaaagcc
gcagaagtatacggcctagaagaaggaaaagtaacagtactaatacacacaggatccaga
ggctgcggccaccaaatctgctcagactacctaagagtcatggacaaagcctacaaaaaa
tacaacattagaataccagaccgccaactagcctgcgccccagtagactcccaagaagca
atagaatacttccaggcaatgtcagcagcagcaaactatgcatgggccaaccgccaaatg
atagtacactgggtgagagaatccttcgaacaagtattcaaaacaagcgcagaagaccta
gaaatggatatagtctatgacgtcgcccacaacatagccaaaaaagaaacacacccaata
aaaggcttgaaaagagaagtttacgtccacaggaaaggggctacaagagcctttggccct
ggaagaaaagaaatacccccagaatacaggaagataggccaaccagtcataataccaggt
acaatgggaacatcatcctatgtactccacggaacagaaacagccatggaagaaaccttt
ggatccactgcacatggagcaggacgcaaaatgagcagggcaggtgcgaagagaacatac
cggggcgaaaaagtccaaaggaacctcctagggagggggatttatgtaagggcgacttca
atgccagtaatcgccgaggaagcgccgggcgcctacaaagacgttgacatggtcgttaac
acatcccacaaaacaggaatatcacgtctagtcgccaagatgatacccctaggcgttgca
aaagggtga
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