Methylophilus sp. TWE2: ACJ67_13315
Help
Entry
ACJ67_13315 CDS
T04002
Name
(GenBank) RNA polymerase subunit sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
meu
Methylophilus sp. TWE2
Pathway
meu02020
Two-component system
meu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
meu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACJ67_13315
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACJ67_13315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meu03021
]
ACJ67_13315
Transcription machinery [BR:
meu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACJ67_13315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
Motif
Other DBs
NCBI-ProteinID:
AKR44278
UniProt:
A0A0K0SY93
LinkDB
All DBs
Position
2818212..2819762
Genome browser
AA seq
516 aa
AA seq
DB search
MKQNLQLRISQNLALTPQLQQSIRLLQLSTLELSQELETILQENPLLEMADGEEGEFEDN
SATPTEAIESVHADDANSFDLATQQEITAPAETLREDLHDELGSNEGELANLSEEFNPPE
FEDNYEEFGSTSNWDEAGRNNLDDEDSDFSRQDASNISLREHLLDQIQLAHLSQRDMTLV
KLLLDSINDDGYLEQDLQEIVEHLPLELEVELLELETALKLIQNLDPVGVGARDLRECLL
LQLQHLPSETPYLRTAMALAKDHLALLANKDFVKLRKLLSCDETALKGAQQLIRQQNPKP
GSEFATFSHDHFIQHDVVVKKIKGIWVASLNDGVIPKLRINQLYADILKRNRESSGQYLQ
SQMQEAKWMIKNIQQRFSTILRVSQAIVDRQRNFFEHGDIAMRPLVLREIAEELDLHEST
VSRVTTHKYMLTPRGVYELKYFFGSSVATDAGGSCSATAIRALIKQMVAEENPKKPLSDN
QITDTLAQQGIVVARRTIAKYRESLNIPPANLRKSL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaaacctgcaattacgcatttcacaaaacctggcactgactccgcagctacaa
cagtctatccgtctgttacagttatccacattggagctcagccaggagctggaaaccatt
cttcaggaaaacccgttgctggagatggccgatggagaagaaggcgagtttgaggacaat
tcagcaacccctaccgaagctatcgaatcagtccatgcagacgatgccaactcgtttgac
ctggccacccagcaagaaattactgcacctgccgagacgctgcgcgaagacttacatgat
gaacttggcagcaatgaaggcgaactggccaatctcagcgaagaattcaaccctcccgaa
tttgaagataattacgaagagtttggcagcaccagcaactgggatgaggcaggccgcaac
aaccttgatgatgaggatagtgatttttcgcggcaggatgccagcaatatcagcctgcgc
gagcatttactggaccagattcaactggcgcatctgtcacagcgtgacatgacgctggtc
aagttgctgctcgacagcataaatgacgacggctaccttgagcaagacttgcaggaaatt
gttgaacacctgccgcttgagctcgaagttgagctgcttgaacttgagaccgcactcaaa
ctgatacagaacctggacccggtaggtgtcggagcccgtgacttgcgggaatgcctgtta
ttgcaactgcaacacttgccgtcagaaacgccttatttacgtacggccatggcactcgca
aaagatcatttggccctgctggccaataaagactttgtcaaattgcgcaaactgctcagt
tgcgatgaaaccgcactgaaaggagcgcaacaactcattcgccagcaaaaccccaaacct
ggcagcgaatttgccacctttagtcacgaccactttatccagcatgatgtggtagtcaaa
aaaatcaaaggtatctgggtcgcatcgctcaacgatggcgtgattcccaaactgcgtatc
aaccaactgtatgctgacatcctcaaacgcaaccgcgaaagctcaggccagtatctgcaa
agccagatgcaggaagcaaaatggatgatcaaaaatatccagcagcgcttctccaccatt
ctgcgcgtgtcgcaagcgattgtagaccgtcagcgcaacttctttgagcatggcgacatt
gccatgcggccattggtgcttcgtgaaattgccgaagagctagatttgcatgaaagcact
gtttcacgagtcaccacgcataaatatatgctcacaccgcgtggcgtttacgagctcaaa
tatttctttggcagttcggtggcaactgatgcgggcggctcttgctcggcgacggccatc
cgcgccttgatcaaacaaatggtggcagaagaaaacccgaaaaaaccgctctcggataac
cagattacagataccttggctcaacaaggcattgtggtcgcgcggcgtaccattgccaaa
taccgtgagtctttgaatattccgcccgccaatttacgcaaatcgctttaa
DBGET
integrated database retrieval system