Methylomonas sp. UP202: QC632_00320
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Entry
QC632_00320 CDS
T10336
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
meup Methylomonas sp. UP202
Pathway
meup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC632_00320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meup03019
]
QC632_00320
Enzymes [BR:
meup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QC632_00320
Messenger RNA biogenesis [BR:
meup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QC632_00320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Nup54_57_C
Motif
Other DBs
NCBI-ProteinID:
WGS86221
LinkDB
All DBs
Position
complement(67966..69315)
Genome browser
AA seq
449 aa
AA seq
DB search
MKKTILTETRFSNLELSDSIIKGLKEAGFIQCSPIQDRALPIALRDRDVAGQAQTGTGKT
ATFLLATFQRLINDESEKIKNPRALILAPTRELAIQIHKDALALSRYLNLKFALIYGGTD
YQKQLDKLKTDVDIIIGTPGRIIDFYRQGAFTLDNIQVSVMDEADRMFDLGFIKDIRFLL
RRMPPPEKRLNLLFSATLSYKVTELAYEHMNNPVMVKIETEEVTSKAINQFAFCPANDQK
IPLLLGLLKTHQPVRSIVFVNTKRCAEQLDDYLQANGHKVAMLSGDVPQEKRQRLLNDFQ
ENRVTLLIATDVAARGLHIPDVSHVFNYDLPQDVEDYVHRIGRTARFGASGEAISFICEE
YAYSMPDIEDYIGEKVPVRAIDQELLIEDVIKPERREPRERVPAHGKRPPRGDKPERDRR
PPRPHREHGQPATTAPASAPENLPQPETP
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaacaattttgacggaaacccgttttagcaacctggagttgtccgactccatt
atcaaaggtttgaaagaagccggattcatccaatgctcgccgatccaggacagagccctg
ccgattgcgctacgcgaccgcgatgtcgccggccaggcccaaaccggcaccggcaagacc
gccacgtttttgttggcgacctttcagcgtttgatcaacgacgaaagcgaaaagatcaaa
aaccccagagcattgattttggcgccgacccgtgagctggcaatccagattcataaggac
gccctggcgctcagccgctatctgaatctgaaattcgcgctgatctacggcggcaccgat
taccagaagcaactcgataaactgaaaaccgacgtagacatcattatcggcacgccgggg
cgcattatcgacttttaccggcaaggcgcattcacgctcgacaatattcaggtgtcggtg
atggacgaagccgaccggatgttcgatctgggcttcatcaaggacattcgcttcctgcta
cgccggatgccgccgccggaaaagcgtttgaatctgttgttttcggccacactgtcctac
aaagtgaccgaactcgcctacgaacacatgaataacccggtgatggtcaagatcgagacc
gaggaagtcacctccaaggccatcaatcagttcgcgttctgtccggccaacgatcagaaa
attccgctattgctgggtttgttgaaaacccaccagccggtgcgcagcatcgtgttcgtc
aacaccaagcgttgcgccgaacagctcgacgattatctgcaagccaacggccacaaagta
gcgatgctgagcggcgacgtgccgcaggaaaagcgtcagcgcctgctcaacgacttccag
gaaaaccgggtcaccttgctgatcgccaccgatgtcgcggcgcgcggcttgcatattccc
gatgtgtcgcacgtgttcaactacgatctgccacaggatgtcgaggattacgtacaccgt
atcggccgcaccgcccgtttcggcgccagcggcgaagcgatcagctttatctgcgaggaa
tatgcctactcgatgcccgacatcgaagattacatcggcgaaaaagtgccggttagggcc
atcgaccaggaattgctgatcgaagacgtgatcaagccggaacggcgcgagccgcgcgaa
cgcgtgccggcccacggcaagcggccgccgcgcggcgataaaccggaacgcgaccgccgg
ccgccgcgtccgcaccgcgagcacggccagcccgctacaacagccccggcatcagcgccc
gaaaatcttccacagccggaaactccgtaa
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