Methylomonas sp. UP202: QC632_08885
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Entry
QC632_08885 CDS
T10336
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
meup Methylomonas sp. UP202
Brite
KEGG Orthology (KO) [BR:
meup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
meup03009
]
QC632_08885 (rlmD)
Enzymes [BR:
meup01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
QC632_08885 (rlmD)
Ribosome biogenesis [BR:
meup03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QC632_08885 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
RrnaAD
TRM5-TYW2_MTfase
TRAM
Methyltransf_25
MTS
PCMT
Cons_hypoth95
Methyltransf_11
Methyltransf_15
PrmA
Methyltransf_23
LRR_10
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
WGS87861
LinkDB
All DBs
Position
2047310..2048635
Genome browser
AA seq
441 aa
AA seq
DB search
MAYKKKLPLDPVTVTIESLSHDGRGISHVNGKVVFIDEALPGESVDFVYTDSRRDYAEGK
VVKLHDRNPHRVDPACPHFGSCGGCSFQHVDDAEQIHFKEDLLREQFRRIGKVEIPQIWE
ALTGPHWGYRTKARMGVKWVAKKGRVLVGFRERRNPYLAEIDACKVMHPIVGEKLTLLGD
MIAGLTIKDKIPQIEVAIGDHECVLAFRVLEAPTAEDKQRMREFAHRHQISICLQPKGPD
SIVPLDGEPEVIPSYALPEYGVKFNFRPAMFTQVNYDINRQMIARALAALELTKADRVLD
LFCGLGNFTLPLATRAGYVVGIEGDTPLVNHARENVRLNRLDNVEFHVADLTKDVRDQPW
SQQKFTKVLLDPSRAGASEVLHNFKHWRPERIVYVSCNPSTLARDAGILVNELGYQLVKA
GVMDMFPQTAHVESIALFVKP
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcttacaagaaaaaacttccgttagacccggttaccgttaccatcgaatccttgtcc
cacgacggccgcggcatcagccacgtcaacggcaaggtggtgttcatcgacgaagccttg
cccggtgagagcgtggacttcgtctataccgacagccgccgcgattacgccgaaggcaag
gtcgtgaaactgcacgaccgcaatccgcaccgcgtcgatccggcctgtccgcacttcggc
agttgcggcggctgcagcttccagcatgtcgacgacgccgagcagattcatttcaaggaa
gatttgctgcgcgagcagtttcgccgcatcggtaaggtcgagattccgcaaatatgggaa
gcgctgaccgggccgcattggggctaccgcaccaaggcgcgtatgggggtgaaatgggtc
gccaaaaagggcagggtgctggtcggttttcgcgagcgccgcaatccctatctggctgaa
atcgatgcctgcaaggtgatgcaccctatcgtcggcgaaaagctgaccctgctcggcgac
atgatcgccggcctgaccatcaaggacaagattccgcaaatcgaggtcgcgatcggcgac
cacgaatgcgtgctggcgtttcgggtgttggaagcgccgaccgccgaggacaagcagcgg
atgcgcgaatttgctcatcgccaccagatcagcatttgcctgcaacccaagggaccggac
agcatcgtgccgctggacggcgagcccgaggtgattccaagctatgccttgccggaatac
ggcgtcaaattcaactttcggccggcgatgttcacccaggtcaattacgacatcaatcgg
caaatgatcgcccgcgcgttggccgcgctggaattgaccaaggccgaccgggtattggat
ttgttttgcgggctgggcaatttcacgctaccgctggcgacccgcgccggttacgtggtc
ggcatcgaaggcgacacgccgctggtcaatcatgcccgcgaaaatgtccgcttgaaccgg
ctggacaatgtcgaatttcacgtcgccgatttgaccaaggacgttcgggatcagccctgg
agccagcaaaaattcaccaaggtgttgctcgatccgtcgcgggccggcgcatccgaggtg
ttgcacaacttcaagcattggcggccggaacgcatcgtctacgtgtcctgcaatccatcg
acattggcgcgcgatgccggtattctggtcaacgaattgggttaccaactggtcaaggcg
ggcgtgatggatatgttcccgcagaccgcccacgtcgagtccatcgcattattcgtcaaa
ccatga
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