Methylomonas sp. UP202: QC632_22515
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Entry
QC632_22515 CDS
T10336
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
meup Methylomonas sp. UP202
Pathway
meup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC632_22515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meup03019
]
QC632_22515
03009 Ribosome biogenesis [BR:
meup03009
]
QC632_22515
Enzymes [BR:
meup01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QC632_22515
Messenger RNA biogenesis [BR:
meup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QC632_22515
Ribosome biogenesis [BR:
meup03009
]
Prokaryotic type
rRNA processing factors
QC632_22515
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WGS85778
LinkDB
All DBs
Position
5092648..5094819
Genome browser
AA seq
723 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIITRVEPSLEAAFVNY
GAEKHGFLPFKEIAPEYRTGDDGEGKSSKSNIREGQEIVVQIEKEERGNKGAALTTYISL
AGTYLVLMPNNPKAGGISRRIEGDNRSELRETMAALEIPDSMGLIIRTAGSDKNVEELQW
DLNYLMQLWEAIDRSSQEQAAPFLIFQESNVIIRALRDHLRGDIDEILIDQEGAFKLVQN
FLKQVMPHNLHKAKQYQDTVPLFSRYQIETQIEMAYKREVSLPSGGSIVIDHTEALTSID
INSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMSNKNQREVENRL
RDALKIDRARIQTGRISRFGLMEMSRQRLRPSLGDSTQLTCPRCKGQGTIRNVESVTLSV
LRLIEEEAMKKGTERVIAHLPIDCATFLLNEKRAAIQEIEARLHVGIIVLPSKHLETPAY
DIERIKTVEGDDKASHLQLKEEEIAVPEFAKQAGPKSEKAAIKEFLPDSPAPVQSKKNSA
SLIQRFWQRLIGKDKIAETPEASGEGKPGEERNRPNRNVRKDRPGAGRNGRRNNNNRRGG
SPNPQAATDNAVTQTASPVAEQPLPATPGEQEGEGAPRRNGQERSRRNRNRRRNPRNSAE
RKTEQNYNGESDQSSAEAPSNRYVSNDSIAPANSYASEFAERSSNRSQESAEPQPRPQSS
AEE
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaacgccacgcaacccgaagagttgcgagtggccttggtagat
ggtcaaaaactctatgattttgacatcgaagtcccttccaaagaacagaaaaaatccaat
atctataaaggcatcatcacccgggtagaacccagtctcgaagccgctttcgtcaattac
ggcgccgaaaagcacggctttctgccgtttaaggaaatcgccccggaataccgcaccggc
gacgacggcgaaggcaagtcttcgaagtcgaatattcgggaaggtcaggaaatcgtcgtc
cagatcgagaaagaggagcgcggcaacaagggcgccgcgctgaccacttacatcagtcta
gccggcacctatctggtgctgatgccgaacaatcccaaggctggcggcatctcccgacgc
atcgaaggcgataatcgcagcgaattgcgcgaaaccatggcggcgctggaaattccggac
agcatgggcctgatcattcgtaccgccggttccgataaaaacgtcgaagagctgcaatgg
gacttgaattacctgatgcaactttgggaagcgatcgatcgctccagccaggaacaagcc
gccccctttctgatcttccaggaaagcaacgtcatcatccgcgcgttgcgcgaccacttg
cgcggagacatcgacgaaatcctgatcgatcaggaaggcgcctttaaactggtgcaaaac
ttcctgaagcaagtgatgccgcacaacctgcataaggccaagcaatatcaggacaccgta
ccgctgttcagccgttaccaaatcgaaacccagatcgagatggcctacaagcgcgaagtc
tcgttgccgtccggcggctctatcgtcatcgaccataccgaggcgctgacgtctatcgac
atcaactcggcgcgcgccaccaaaggtagcgacatcgaagaaaccgcgctgaataccaac
ctggaagccgccgacgagattgcccgccaactgcgactgcgcgatttgggcggcctgttc
gtgatcgacttcatcgatatgatgtcgaacaaaaaccaacgcgaggtcgaaaaccgcctg
cgcgatgcgttgaaaatcgaccgcgcccgcattcagaccggccgtatttcgcgcttcggt
ctaatggaaatgtcgcggcaacgcttgcggccgtcgctgggcgattccacccaactgacc
tgcccccgctgcaagggccaaggcacgatccgcaacgtggaatcggtgaccttgtcggtg
ttgcgcctgatcgaggaagaagcgatgaaaaaaggcaccgagcgcgtcatcgctcacctg
cctatcgactgcgccaccttcctgctcaacgaaaaacgcgcggcgattcaagaaatcgaa
gcccgcctgcatgtcggcatcattgtattgccgagcaaacacctggaaacgccggcctac
gatatcgagcggattaaaacggtggaaggcgacgacaaggccagccacctgcaattgaag
gaagaggaaatcgcggtaccggaattcgccaaacaagccggcccgaaatcggaaaaggcg
gcgatcaaggaattcctgcccgactcgccggcaccggtacagagcaagaaaaattccgcc
agcctgatccagcgcttctggcaacgcttgatcggcaaggacaaaatcgccgaaactccg
gaagccagcggcgaaggcaaacccggcgaagaaagaaaccggcccaaccgcaacgtccgc
aaggaccgccccggtgccggccggaacggtcgccgcaacaacaacaatcgccgcggcggt
agcccgaatccgcaagcagcgacggacaatgccgtaacccaaaccgccagcccggtcgcg
gaacaaccattgccggccacgcccggcgaacaggaaggcgaaggcgcgccgcgccgtaac
ggacaggagcgcagccgccgcaaccgtaaccgtcgccgtaacccacgtaactcggccgag
cgcaaaaccgaacagaattacaacggcgaatcagatcagtcgtccgccgaggcgcccagc
aaccgctacgtcagcaacgactcgatcgccccggcgaattcatatgccagcgagtttgcc
gagcgcagcagcaaccgctctcaagaaagtgccgagccgcaacctcgcccgcaaagctcg
gccgaggaataa
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