Candidatus Methanogranum gryphiswaldense: KRP56_00190
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Entry
KRP56_00190 CDS
T08253
Name
(GenBank) TIM barrel protein
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
meuz
Candidatus Methanogranum gryphiswaldense
Pathway
meuz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
meuz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KRP56_00190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meuz03400
]
KRP56_00190
Enzymes [BR:
meuz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
KRP56_00190
DNA repair and recombination proteins [BR:
meuz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
KRP56_00190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
UvdE
Motif
Other DBs
NCBI-ProteinID:
UAL07726
LinkDB
All DBs
Position
complement(35646..36455)
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AA seq
269 aa
AA seq
DB search
MRFGLAGYPSAGKTPEGSLKYTKELGLDALEVEFVRGARISEERAKVVGKTAEDLDIRLS
CHAPYFISFNSDTQETRDKSIGWVMDTVHAAHNLRAYIIVIHAATYGKSPNTALSSVIDG
LSKCKNMMDDEGIKDVILGIETMGKKGQFGTLKEISKVMDSVDGVRPVLDVAHVHARGVG
CLKTRTDMQGLVDEYFPLCGSIAHFHISCIKYGEKGEISHLPLETKDPDLQILADVLEGS
KQDCTFICESPLIEKDAVVFRNMFPSYRS
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgagatttggactcgcaggatatccttcggcaggtaagacgccggaaggttctttgaag
tacactaaagagctggggctggatgctttagaggtagaatttgtacgtggtgcaaggata
tccgaggaaagagcaaaggtcgtaggtaaaaccgcagaagatcttgacataaggttaagt
tgtcacgccccctattttataagttttaactcggatacacaagaaacacgggataagagt
ataggctgggtcatggacactgtacatgcggcacacaatctaagggcctacataattgta
attcatgccgcaacctatggtaaatcgccaaatacggctctttcatcggtcatagacggt
ctttccaaatgtaagaatatgatggatgatgaagggataaaagacgtcatcctgggtatc
gagaccatgggaaagaaggggcagttcggaacactaaaagagatatcgaaggttatggat
tctgttgacggggtcagacctgtcttagatgttgcacatgttcatgccaggggcgtaggc
tgtcttaaaacaaggacagatatgcagggcctcgtggatgaatattttcctctttgtgga
agcatagctcattttcatatcagttgtataaaatatggggaaaaaggtgagatttcgcac
cttccattggaaacaaaagatcccgatcttcaaatcctggctgatgttttggaaggttcc
aaacaagattgtacattcatatgcgaatcaccattgatcgagaaagatgctgttgtcttt
cggaatatgttcccatcctatcgctcttaa
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