Candidatus Methanogranum gryphiswaldense: KRP56_00425
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Entry
KRP56_00425 CDS
T08253
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
meuz
Candidatus Methanogranum gryphiswaldense
Pathway
meuz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
meuz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
KRP56_00425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meuz03019
]
KRP56_00425
03009 Ribosome biogenesis [BR:
meuz03009
]
KRP56_00425
04131 Membrane trafficking [BR:
meuz04131
]
KRP56_00425
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
meuz04147
]
KRP56_00425
Messenger RNA biogenesis [BR:
meuz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
KRP56_00425
Ribosome biogenesis [BR:
meuz03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
KRP56_00425
Membrane trafficking [BR:
meuz04131
]
SNARE
SNARE associated proteins
Others
KRP56_00425
Autophagy
Aggrephagy
Other aggrephagy associated proteins
KRP56_00425
Exosome [BR:
meuz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
KRP56_00425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_5
CDC48_2
AAA_22
TIP49
AAA_14
nSTAND3
AAA_33
NPHP3_N
Mg_chelatase
RNA_helicase
AAA_28
DUF5906
IstB_IS21
Zeta_toxin
NACHT
Sigma54_activat
ABC_tran
AAA_7
AAA_24
AAA_18
TsaE
DUF815
Parvo_NS1
Bac_DnaA
AAA_25
AAA_17
NB-ARC
AAA_3
ATPase_2
AAA_lid_PRS2_C
AAA_11
AFG1_ATPase
AAA_30
ORC-CDC6-like
PhoH
SLFN-g3_helicase
Vps4_C
UFD1_N2
Motif
Other DBs
NCBI-ProteinID:
UAL07768
LinkDB
All DBs
Position
complement(81487..83652)
Genome browser
AA seq
721 aa
AA seq
DB search
MTNNKAIKVAELKPGETGKGICRLDPELMDILDIKVGDIIQIDGNKKTVAKVLRGGPEDA
NRGVIRIDGSTRRNAGTSIDERVNVKKIVAKNAEKITFSPIEELRLQGGEEYLAQVMEGR
VFTKGDVLTLNVMGNKIELIVTSFAPSAEAVIMNTNTEVKVSEKPVKASNMEVPKVSYDD
LGGLGNEVGKIREMIELPLKHPELFKRLGVEAPKGVLLHGPPGTGKTMLAKAVAGETSSN
FISIGGPEIMSKFYGESEGKLREIFKEAEENAPSIIFIDEIDSIAPKRDEVTGEEERRIV
AQLLSLMDGLNSRGKVVVIGATNRPNSLDEALRRPGRFDREIEIGIPDRNGRLEILQIHT
KGMPLTSDVDLGRLADRTHGYVGADLSALCKEAAMAALRRVLPSVNLETEEIPIDVLNQI
SVTKDDFMSAIKDLQPSAMREVLIEKPNVKWDDIGALESAKQELREAVEWPLKYAKVFEH
MDAKPPKGILLYGPPGTGKTMLAKAVATESEANFISVKGPEFLNKWVGESEKAVRETFRK
ARQASPCVIFMDEIDSIAPTRSGDDNNNVTERVISQMLTEMDGLEAMNNVVVIAATNRPD
IIDPALLRPGRFDKSIYIGPPDKESRQTIFKIHTAGKPLAKDVDLSKLADATEGCTGADI
AAICNEAVMTAVRRLVKDGRIPTQDEINATKVDMIDLENAVQKFGPKIAKELREYGNKNK
N
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacaacaaagcgattaaagtcgcagaactaaaacccggagaaaccggaaaggga
atctgccgtctagaccccgaactaatggatatactggatataaaggtcggagatataatc
cagatagacggcaacaaaaaaacagtagcaaaggtactcaggggaggaccagaagatgcg
aatcgtggggtcataaggatagacggttcgacaagacgcaatgcaggtacatccattgat
gaaagagtgaacgtaaagaaaatagtagcaaaaaatgctgaaaagataaccttctcaccg
attgaagaactcagactccagggtggggaagaatatctagcacaggtcatggaaggccgt
gttttcacgaaaggtgacgttttgacacttaacgtcatgggcaacaagatcgaattgata
gtgacctctttcgccccctcggcagaggccgtcatcatgaataccaacactgaagtgaaa
gtatcagagaaacctgtgaaggcttccaatatggaggtccccaaggtatcctatgatgat
ctaggcggacttggtaatgaggtcggtaaaatcagagaaatgatagaactgcctcttaag
cacccagagctcttcaagaggcttggcgttgaagctcctaaaggagtcttattgcatggg
ccacctggaacaggaaagacgatgctggcaaaagctgttgccggagagaccagcagtaat
ttcatttccatcggtggacccgagatcatgagtaaattctacggagaatccgaaggtaaa
ctcagagagatattcaaggaagcagaagaaaacgcaccgagtataatcttcatcgatgag
atagattcgatcgcaccgaaacgtgacgaggtcaccggtgaagaagaaagacgcatcgtt
gctcaactactatcattgatggacggattgaactcgagaggaaaggttgtcgtaataggg
gcaacaaacagacctaactctctagacgaagcattgagaagacctggaagattcgatcgt
gagatcgagatcggaatacctgacaggaacggacgccttgagatccttcagatacacaca
aaaggaatgccactgacaagcgatgtggatttgggaaggttagccgacagaacgcacgga
tatgtgggtgcggatctgtccgccctgtgcaaagaagctgcgatggcggcactaaggcgc
gtacttcctagcgtcaatctagagaccgaggagatcccaatagatgtccttaatcagata
agcgtcacgaaggacgatttcatgtccgcgataaaggacctccaaccttcagccatgaga
gaggtcttgatagagaaacccaacgtcaagtgggatgatatcggtgcgctggaatccgcc
aaacaagaactcagggaagctgttgagtggccactgaaatacgcgaaggtcttcgaacat
atggacgccaaacctccaaagggcatattgctttacggaccccccggaacaggaaagacg
atgttggcaaaggcggttgctacagaatcggaagctaacttcatatccgtcaaaggtcca
gaattcctcaacaaatgggttggagaatcggaaaaagcagtcagagaaaccttcaggaaa
gcaagacaggcttcaccatgcgtgatcttcatggacgaaatagattcgatcgcacctaca
agaagtggggacgataataacaatgtcacagaaagagtgatatcacaaatgcttacagaa
atggacgggcttgaagcaatgaacaatgtggtcgtcattgcagcgacaaacagacctgat
atcatagacccagcattgctaaggcctggaagatttgacaagagcatatacatcggtcca
ccggacaaagaatcaagacagaccatattcaagatacatactgccggaaaacctctggct
aaagatgtagatctgtcaaaactcgcagatgccaccgaaggctgtaccggagctgacatc
gctgcgatctgcaacgaggcagtcatgacagcggtcagacgcctggtaaaagatggcagg
atccccactcaggatgagatcaatgctacaaaggtagatatgatcgatctagaaaacgct
gtacagaaattcgggcctaagatagcaaaagaactgagagaatacggtaacaagaacaaa
aattaa
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