Candidatus Methanogranum gryphiswaldense: KRP56_02035
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Entry
KRP56_02035 CDS
T08253
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
meuz
Candidatus Methanogranum gryphiswaldense
Brite
KEGG Orthology (KO) [BR:
meuz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
meuz03016
]
KRP56_02035
Enzymes [BR:
meuz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KRP56_02035
Transfer RNA biogenesis [BR:
meuz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KRP56_02035
Prokaryotic type
tRNA splicing ligases
KRP56_02035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UAL08053
LinkDB
All DBs
Position
complement(369276..370727)
Genome browser
AA seq
483 aa
AA seq
DB search
MTWNGRLNKIDDNRWEIPADYFPGMRTNAIIYANESMIEHIRSDNAPQQAANVACLPGIV
GSSMAMPDIHWGYGFPIGGVAAVNADSGSISPGGIGFDINCGVRLIKTDLTVEDLDGKIN
LLVDELYKNVPSGLGSKGLTRIGNKEMDDILLNGSEWAVENGYGWEKDLDVTEERGHMTD
ADSSVVSDKARKRGLPQLGSLGSGNHFLELDVVDNVFDERTAKIFGLKKGTVTITVHCGS
RGCGHQIATDYLQDMEQYIRKNSVDLPDRQLACAPLDSKLGDDYYKAMCCGANYAWANRQ
MITHWARESFENVLGDSAENMGMDVVYDVAHNIAKKERHSVEQHNEDVLVHRKGSTRAFA
PGRKEITMKYRDAGQPVIIPGDMRVGTYVLVGRQGAMKDTFGSTCHGAGRQMSRKTAIES
MDLKTIREDLAANNIYLRNGSDEGLLEEAPGAYKDVDEVIKVVCDAGLTGKVAKLTPIGV
VKG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgacgtggaacggcagactcaacaagatagatgataacagatgggaaatccctgcggac
tattttcctgggatgaggaccaacgccatcatttatgccaatgaatctatgatcgaacac
atccgcagtgataatgctcctcaacaagctgccaatgtcgcatgccttccaggaatagtc
ggtagctcgatggccatgccagatatccattggggatatggattcccgatcggaggcgtg
gcggctgtcaatgcagatagcggctccatatctcctggcggcataggcttcgatataaac
tgtggcgtacgcctcatcaaaacagatctcactgtagaggaccttgacggtaagatcaac
ctcttggttgacgaactttacaagaacgtcccatctggattgggttcgaaaggacttacc
aggatagggaacaaagaaatggatgatattctactcaacggttcagaatgggccgtagag
aacggatacgggtgggaaaaggacctggatgtcacagaagaaagaggtcacatgacagat
gcggactcctctgtggtaagtgataaggcccgcaaaagaggtttacctcaattgggttcg
ttgggttctggaaaccacttcttggaattggatgtcgtcgacaatgtattcgatgaacgg
accgctaagatatttggactcaaaaaaggaacggtcaccataacagtgcattgcgggtcc
agaggatgcggacatcagatagccaccgattacctgcaggacatggaacagtacataaga
aagaattccgtggacctgcctgacagacaacttgcatgtgcaccgttggattccaagctc
ggtgacgactactataaagcgatgtgttgcggagccaactatgcctgggcaaacagacag
atgataacgcactgggcgagggaatcattcgagaatgtactgggtgactcagccgagaac
atgggaatggatgttgtatacgatgtcgcacacaacatagcgaaaaaagaacgccattct
gtcgaacagcacaacgaagatgttctcgttcatagaaaaggctccactcgcgccttcgca
ccgggaagaaaagagatcacaatgaaatatcgtgatgcaggacagcctgtcattattcca
ggggacatgcgcgtaggcacatacgtgcttgtcggaagacagggcgccatgaaagatacc
ttcggatccacatgtcatggggcaggaagacagatgtcccgtaagacagcgatcgaaagc
atggacctcaaaacgatcagagaggatctggccgctaacaacatctacctcaggaacgga
tctgacgagggacttcttgaagaagctcccggagcatacaaggacgtcgatgaagtgata
aaggtcgtatgtgacgctgggctcacgggcaaagtggcaaaattgacacctatcggggtc
gtcaaaggctga
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