Candidatus Methanogranum gryphiswaldense: KRP56_02880
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Entry
KRP56_02880 CDS
T08253
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
meuz
Candidatus Methanogranum gryphiswaldense
Pathway
meuz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meuz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KRP56_02880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meuz03019
]
KRP56_02880
03009 Ribosome biogenesis [BR:
meuz03009
]
KRP56_02880
Enzymes [BR:
meuz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KRP56_02880
Messenger RNA biogenesis [BR:
meuz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KRP56_02880
Ribosome biogenesis [BR:
meuz03009
]
Prokaryotic type
rRNA helicases
KRP56_02880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UAL08208
LinkDB
All DBs
Position
559047..560456
Genome browser
AA seq
469 aa
AA seq
DB search
MISKFTDLGISEDIASAMDEMGWDEPTPIQIQAVPMGLKGIDMFAQAQTGTGKTGTFGSI
VLGRIPAGKKLPSAIIIVPTRELANQVAEEFSRLAMFTGHVTVPIYGGASIEGQIKKLEH
GADVIAGTPGRVRDMISRGILNMTCISEVVMDEADRMLDMGFIEDIEFILSSMPSDRQTL
LFSATMPEDIKRLASDYMKKPKEISVSKDEMVLDLTKQYYISVGRRNKSWALCRILDIDK
PKAIIFCQTKKMVDILVERLEGFDYKVEAIHGDMPQTKRERVIKDFRNDKIDILIATDVA
ARGLDIDDISYVVNYDMPEDVDTYIHRIGRTGRAGKEGVAISFITTEEEYLIKELELRTG
MVIEKRDVPETEEGTKDTIRRVVDYDQICDVFGMCKFEINLGKKDGIGKVSLADYIIRVA
KVREFSIGKIQIDENSSIVEVHKDFGNRMTMDLPKVKFKGKKIFVKVIQ
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgatctcaaagttcacagatttaggtatttctgaagatatagcaagtgcgatggatgaa
atgggttgggatgaaccaacacccatccagatacaggctgtacccatgggattgaaaggt
attgatatgtttgcacaggcgcagacaggtaccggaaagacaggaacattcggttcgatc
gtgttgggaaggatacctgcgggaaagaaattgccatcggccataataatcgttcccact
cgcgaactcgcgaatcaggtcgcagaggaattcagcaggttagccatgttcacgggtcat
gttacagtgcccatctatggtggagcgagcatcgagggccagataaagaaactggagcat
ggtgcagacgttatcgctgggactcctggaagggtcagagatatgatatccagaggcatc
ctgaatatgacatgcatatcggaggtcgtcatggatgaggccgaccgtatgctcgatatg
ggattcatagaggatatcgaattcattctgagttctatgcccagcgacagacagacactt
cttttttcggccacaatgccagaggatatcaagcgtctcgcctccgactacatgaaaaag
ccaaaggagatcagtgtttccaaggacgagatggtactcgatctcaccaaacaatattat
atttcggtgggaaggaggaacaaatcctgggctctttgcaggatactcgatattgacaag
cccaaggcaataatattctgtcagaccaagaagatggtggacatcctcgtggaaaggttg
gaaggattcgattacaaggtagaggccatccatggtgacatgcctcagaccaaaagagag
agggtcatcaaggatttcaggaatgataagatcgacatcctcatagcgaccgatgttgcc
gcaaggggattggatatcgatgatatctcttacgtcgtcaattacgacatgcccgaggat
gtggacacatacatccacaggattggaagaactggaagggccggcaaagaaggagttgcg
atatcattcatcacaaccgaggaagagtatctcataaaggaactcgagcttcgtaccggg
atggtaatagagaaaagagacgttccggaaacggaagaaggtacaaaggatactatccgt
agggtcgtggattacgatcagatatgtgatgtgttcggaatgtgcaaatttgagatcaat
cttggaaagaaagacgggattggaaaggtctctcttgcagactatataatacgtgtagct
aaggtcagagaattctctataggaaagatacagatcgatgagaactcatcaatagtggaa
gttcacaaggatttcggcaatagaatgacgatggaccttccaaaagttaagttcaaaggt
aagaagatattcgttaaggtcattcaataa
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