Candidatus Methanogranum gryphiswaldense: KRP56_04325
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Entry
KRP56_04325 CDS
T08253
Name
(GenBank) winged helix-turn-helix domain-containing protein
KO
K13641
IclR family transcriptional regulator, acetate operon repressor
Organism
meuz
Candidatus Methanogranum gryphiswaldense
Brite
KEGG Orthology (KO) [BR:
meuz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
meuz03000
]
KRP56_04325
Transcription factors [BR:
meuz03000
]
Prokaryotic type
Helix-turn-helix
IclR family
KRP56_04325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_20
HTH_5
MarR_2
HTH_24
TrmB
MarR
HTH_27
HTH_11
HTH_IclR
Sigma70_r4_2
GerE
TFIIE_alpha
HTH_9
Sigma70_r4
HTH_AsnC-type
Staph_reg_Sar_Rot
DUF742
HTH_DeoR
Motif
Other DBs
NCBI-ProteinID:
UAL07080
LinkDB
All DBs
Position
complement(844387..845868)
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AA seq
493 aa
AA seq
DB search
MDTDIMADIEYSDHYAIFVTDGGVRYLTNPVSISIMDILQHSEMTSSEIALELNLSKSSI
QSNMMKLLRWQLVNSYQDANDKRKVVYYPSSFKCLESVEVRPEILQAEKTIVERIVLNQK
GHDSAILMLTSIIPLSVGISIDPLLERCGRLSAHYMWKKFGNVDDEQFIRAITEIYNRAS
FPSIKIIINGKDMVVEQTHRGQTSRESLISTRLVIGSLCQFMMERTGDPYHLDSVEEKDD
TTYLIIKPYNCCCKGKNSILASEEKRDDKPYAVYLVGNKSILFGNETQMRILELLKEGKR
SLKQLSEQLDIPPVTVHMNIAKLMKIGAISSDNDTRSKYVYYELQAIPMLIPAKMEKGCT
SLVEEMFRSLADHPSDYYRYAFKYVTCALRLTGIDGTGLMYRTGSEFAKAMVSHDPNIEP
EVFLDKACGINIGYDLNTRILSHIPLRINIKRNSIGDMEFRHISSFYEGLIKSGLKELTE
TDYNVFFVSEMKF
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
ttggatacagatatcatggcagacatagagtacagcgatcattacgcaatattcgtgacc
gacggaggagtaagatatcttaccaatcccgttagcatcagtataatggatatacttcag
cattcagaaatgacatcttctgagatcgctttggaattgaatttgtcgaagtcgtccata
cagtccaatatgatgaaattattgagatggcagcttgtaaattcctatcaagatgctaat
gataaaagaaaggtcgtttattatccatcatctttcaaatgcttggaatctgtagaagtg
agaccggagatcttgcaggctgagaaaacgatcgtggagcgtattgtcctgaatcaaaaa
ggacatgacagtgcgatactcatgcttacaagtataataccgctcagcgtaggaataagt
atcgatcccttattggaaagatgtggaagactttctgctcattatatgtggaaaaaattt
ggtaatgtggatgatgagcagttcataagagcgataactgagatttacaacagagcttcg
tttccgtcaataaagataatcatcaacggaaaagatatggtcgtggagcaaacacatcgc
ggtcagacttcaagagagtctttgatatccactcgtcttgtgattgggtcgctgtgtcaa
ttcatgatggaaaggacaggtgacccatatcatctagattctgttgaggaaaaggacgat
acgacatatctgataatcaaaccatataattgttgttgtaaaggaaagaatagtatactt
gcttcagaagagaaaagagatgataagccgtatgcagtatacctcgtaggaaataaatcg
atacttttcggtaatgagacacagatgaggatattagaattgctgaaggaaggaaaaaga
tcacttaagcaattatcagaacaattggacataccgcctgtaacagtgcacatgaacata
gcgaaattaatgaaaataggtgccatttcatctgataatgatactcgttcaaagtatgtt
tattatgaacttcaggccataccaatgttaattcctgcaaagatggagaaaggttgcacg
agtttagttgaggaaatgtttcgttcattggcagaccacccttcagactattacagatat
gctttcaagtatgttacctgtgcactcagacttacaggaattgatggtaccgggcttatg
tataggacaggttcagaatttgcgaaagcaatggtatcacatgatccgaacattgagccc
gaggtctttttagataaggcttgtggaatcaatattggatatgaccttaacacaagaata
ttatcacacatacctttgagaatcaacattaaaagaaacagtataggcgatatggaattc
agacacatatcctcattttatgaaggattgataaaatcaggattgaaggagcttactgaa
accgattacaatgttttcttcgtatctgaaatgaaattttga
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