KEGG   Candidatus Methanogranum gryphiswaldense: KRP56_06025
Entry
KRP56_06025       CDS       T08253                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
meuz  Candidatus Methanogranum gryphiswaldense
Pathway
meuz03030  DNA replication
meuz03410  Base excision repair
meuz03420  Nucleotide excision repair
meuz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:meuz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    KRP56_06025
   03410 Base excision repair
    KRP56_06025
   03420 Nucleotide excision repair
    KRP56_06025
   03430 Mismatch repair
    KRP56_06025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:meuz03032]
    KRP56_06025
   03400 DNA repair and recombination proteins [BR:meuz03400]
    KRP56_06025
Enzymes [BR:meuz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KRP56_06025
    6.5.1.6  DNA ligase (ATP or NAD+)
     KRP56_06025
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     KRP56_06025
DNA replication proteins [BR:meuz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    KRP56_06025
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     KRP56_06025
DNA repair and recombination proteins [BR:meuz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     KRP56_06025
   NER (nucleotide excision repair)
    Other NER factors
     KRP56_06025
   MMR (mismatch excision repair)
    Other MMR factors
     KRP56_06025
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-ProteinID: UAL08483
LinkDB
Position
1180736..1182502
AA seq 588 aa
MLYSELAEQFDILEQTSSRLEMTTQLSLFFRKVDPKEIRIIIYLCQGKLHPDFYGIELGM
SDKLVLKAISSTTGTSPEKTEKMWIEQGDSGTVAEGLIGIKKQMTLFSESLTLERVVKNL
LAIENADGKDSQTKKTKYLAQLLHDSSPIEARYLCRIVTGRMRVGAGSMTLLDALAEAFA
TKNDRSDIERGYNITCDLGLVAEKLAIEGLQGIQKMQVTIGNPIKVMLAERLPSITQVIE
KMGGKCAMEYKYDGIRVQAHISKDSVKLYSRRLEDLTSNFPDIAEALRNQCKCTETIIEG
ECVAIDNKTGDMLPFQTVTHRRKKHGMEEAIKEFPVKIFMFDIIYADNADMSMYPYPERR
RILSESFDLKEQIDMTTMKVVNSPEEGEEFFNEALAAKCEGIMAKSLSDDSVYRAGSRGF
LWIKYKKDYEAALTDSFDLAVVGAFFGMGKRAGKYGALLMASYDDETGRFGTVCKLGTGF
DDEFLAKMPELLDGYLSNDKPSSVDAKMIPDVWFDPTVVLEVVAAEISVSPIHTAAEGIF
SKDSGLGLRFPRFTGRIRDDKGPEQCTTVHEICEIYELQEKKDTHISE
NT seq 1767 nt   +upstreamnt  +downstreamnt
atgctttattctgaactcgcagagcaattcgacatcctggaacaaacaagcagtcgtttg
gaaatgacgactcagctttcgttgttcttcaggaaggtcgatccgaaagagatcaggata
atcatttatctctgtcaaggaaaactccaccctgatttttacggtatagagctcggaatg
tccgacaaacttgtattgaaagcgatatcatctaccactggaacatctcctgagaaaacg
gagaagatgtggatagaacaaggagactcaggcacagtagctgagggtctcataggtatc
aaaaaacagatgacgctattctcggagtcccttacacttgaaagagttgtgaaaaatctc
cttgcgatagagaacgcagacggaaaggacagccaaacaaaaaagacaaaatatctggca
caattgcttcatgactcttcacccatagaggcaagatacctctgccggatagtaacagga
aggatgagggtcggggcagggtccatgaccctattggacgcactggccgaagccttcgca
acaaagaatgaccggtccgatatcgagagaggatacaatataacctgtgatctgggactt
gtagcagaaaaacttgcaatagaaggtttgcaaggcatacagaaaatgcaggtcacgatt
ggcaatcctataaaggtcatgctagccgaacgtctaccctcgatcacacaggtgattgaa
aaaatgggcggaaaatgtgcaatggaatacaaatacgatgggatcagagtgcaggcccac
atcagtaaagactccgtaaagctctattcacgcagactggaagatctgacatccaacttt
cctgacatagctgaggccttgaggaaccaatgcaaatgcacagagaccataatagaagga
gaatgcgtggccattgacaataagaccggagatatgctccctttccaaaccgttacccac
aggcgcaaaaaacatggcatggaggaagctattaaggaattccctgtcaagatattcatg
ttcgatatcatttacgcagacaacgccgacatgtctatgtatccatatccagaaagaaga
aggatattatctgaatccttcgacctgaaggaacaaatcgatatgaccaccatgaaggtc
gtgaactctcctgaggagggggaggaattcttcaacgaagcacttgccgcgaaatgcgaa
gggataatggcaaaatcattgtctgatgattcagtataccgggcaggttccaggggattc
ctctggataaaatacaagaaagattatgaggccgccctaacagattcgttcgaccttgct
gtggtcggtgccttcttcggaatgggaaaaagagccggaaaatatggagcgctcctcatg
gcctcatatgatgacgagactggaagattcgggaccgtctgtaaattggggaccggattt
gacgacgaattcctggctaaaatgccagaacttctggatggataccttagcaatgacaaa
ccctcttctgtggatgcaaagatgatcccggatgtgtggttcgatcccactgtcgtattg
gaggtagttgcagcagagatcagcgtgagtcctatacacacggccgcagaagggattttc
agcaaagattcgggattggggttgagattcccgcgtttcaccggacgtataagggatgat
aaaggtccggaacaatgcacaactgtccatgagatatgcgagatttatgaacttcaagag
aagaaggacacacatatttcggaatga

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