Candidatus Methanogranum gryphiswaldense: KRP56_06810
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Entry
KRP56_06810 CDS
T08253
Name
(GenBank) RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
meuz
Candidatus Methanogranum gryphiswaldense
Brite
KEGG Orthology (KO) [BR:
meuz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
meuz03016
]
KRP56_06810
Enzymes [BR:
meuz01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
KRP56_06810
Transfer RNA biogenesis [BR:
meuz03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
KRP56_06810
Prokaryotic type
KRP56_06810
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
PUA
DKCLD
Pus10_C
UPF0113
Motif
Other DBs
NCBI-ProteinID:
UAL07518
LinkDB
All DBs
Position
complement(1332684..1333679)
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AA seq
331 aa
AA seq
DB search
MLIKDPKTIPDRWGKRPSDRSVGELLGAGVIALDKPSGPTSHQVTAWARDVIHADKISHG
GTLDPYVSGILPICTGKAVRLTDVVLSSDKEYVCLMRIHADRSEKRIRDVMSRFQGKIYQ
LPPVRSAVKRQLRIRTIKEIDILEIKDRQVLFRVSCDAGTYIRTLCTDVGEVLGCGANME
ELRRSRSGIMTEEKAATLQDITDAYVFWQQDGREEWLRSLIQPMEVLVEPLPKVIVKPTA
VDAVCHGADLNIQGIHMLDDEIRKNALVAMITARGELIALGKMQMSSAKIMATEQGKAVS
TERVFMERGHYPKMWKFSTDLDELQEDITIE
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgttgataaaagacccaaagacgatacccgatagatggggcaagagaccttccgaccgt
tccgtaggggaattgctgggtgccggcgtcatcgcattggataagccttctggaccgaca
tcacaccaggtaactgcatgggcaagggatgttatacatgcggataagataagtcacgga
ggtacgttggacccttacgtgagcggtattcttcccatatgcacaggtaaggccgttcgt
ttgacggatgtagtattgtcctcagataaggaatacgtgtgcttgatgaggatacacgca
gacaggtccgagaaacgtataagagatgtcatgtcaagattccaagggaagatctatcag
cttccaccggtaagatctgctgtgaaaagacagctcaggatcaggacgataaaagagata
gatatattggagatcaaggatagacaggtgctttttagggtctcatgcgacgcaggtact
tacatacgcacactttgcacagatgttggcgaagttctcggttgcggtgcgaacatggag
gaactaagacgttctcgttctggtatcatgacagaggagaaagcagcgacattgcaggac
attacggatgcgtatgtattctggcaacaagatggacgcgaagagtggcttaggagtctc
atccaaccaatggaggtccttgtggaacctttgccaaaggtcattgtcaaacctaccgca
gtagatgctgtttgtcatggtgccgatcttaacatacagggaatacacatgctcgatgac
gagatcagaaagaatgcgttggtagctatgatcacagccagaggtgaacttatcgcctta
ggtaaaatgcagatgtcatccgcaaagataatggcaactgagcagggcaaagcggtttct
acggagcgtgttttcatggaacgcgggcattatcccaagatgtggaaattttctacagat
cttgatgaacttcaagaagatataacgatagagtga
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