Candidatus Methanogranum gryphiswaldense: KRP56_07280
Help
Entry
KRP56_07280 CDS
T08253
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
meuz
Candidatus Methanogranum gryphiswaldense
Pathway
meuz00300
Lysine biosynthesis
meuz00470
D-Amino acid metabolism
meuz01100
Metabolic pathways
meuz01110
Biosynthesis of secondary metabolites
meuz01120
Microbial metabolism in diverse environments
meuz01230
Biosynthesis of amino acids
Module
meuz_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
meuz00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
KRP56_07280 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
KRP56_07280 (dapF)
Enzymes [BR:
meuz01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
KRP56_07280 (dapF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
Pro_racemase
CntK_N
Peptidase_C24
PrpF
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
UAL07599
LinkDB
All DBs
Position
1401280..1402107
Genome browser
AA seq
275 aa
AA seq
DB search
MIFWKYHGIGNDFILLDGSKGDLSIDTEFCKKYCDRNFGIGADGVLYLLPGEGTDITMRI
INADGSEAEMCGNGIRCIAKHAYDFNIVKKEEFTIHTLAGNMKAKLNIENGKVSTVQIDM
GAPILDAKKVPINADGRFLDQPFQADGIRFKANAVSMGNPHFITFSDLSNEQVRRLGPII
ECHPFFPKKTNVEFCKIKDGKIYITVYERGAAWTLACGTGACATTTAAAINGLVPFNVPI
DVHLPGGWLKITVDKDLTYVLMEGPAELVYEGKLN
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgatcttctggaaataccatggcatcggcaatgacttcatcttattggacggctccaaa
ggagacctgagtatagatacggaattctgcaagaagtattgcgaccgcaacttcggcatt
ggggcagacggagtgctctatctcctaccaggggaagggaccgacataaccatgaggata
atcaacgccgacggttccgaagcagagatgtgcggcaacggcatcagatgcatagccaaa
catgcatacgatttcaacatagtgaaaaaagaagaattcaccatccatacactcgccgga
aacatgaaggcgaagcttaacatagagaatggaaaggtctctacggtgcagatagacatg
ggcgcccccatactggatgcgaaaaaggtcccgatcaatgcagatggaaggttcctagat
caaccgttccaagcagatggcataagattcaaagcaaatgccgtatccatgggaaatccc
catttcataacattctcggacctttccaacgagcaggtcagaagattgggacccatcata
gaatgccatccattctttcccaagaagaccaacgtcgaattctgcaagataaaggatgga
aaaatatacatcaccgtatatgagaggggtgcggcatggaccctggcctgcgggacaggg
gcgtgtgccacaacaaccgctgcagcgatcaatggattggtgcctttcaatgtgccgatc
gatgttcacctacccggaggatggctaaagataacggtcgacaaggaccttacttatgta
ctcatggaagggccagcagaactagtttacgaaggaaaactcaattaa
DBGET
integrated database retrieval system
