Methanobacterium paludis: MSWAN_0461
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Entry
MSWAN_0461 CDS
T01509
Name
(GenBank) exosome complex exonuclease 1
KO
K11600
exosome complex component RRP41
Organism
mew
Methanobacterium paludis
Pathway
mew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSWAN_0461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mew03019
]
MSWAN_0461
Messenger RNA biogenesis [BR:
mew03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSWAN_0461
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSWAN_0461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AEG17501
UniProt:
F6D479
LinkDB
All DBs
Position
508584..509312
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AA seq
242 aa
AA seq
DB search
MISIITNSNLSTGTETSARADGRAFDELRPLKIEAGVLERADGSAYVEMGGNKVLAAVYG
PRELHIRRIMMPNKAVLRCKYNMAPFSVDDRKRPGPDRRSVEISKITSEALTPAVFLEKF
PRSTIDVFIEVLEAEGGTRCAGITAASVALADAGVPMRDIVVACAAGKSNGQVVMDLSEV
EDKEGEADLPIAMMPRTGEITLLQMDGHLTGEEFEKALDLAVEGCKRISEEQKKAIKNRY
GD
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
gtgattagtattataacaaatagcaatttaagcacaggtacagaaaccagtgcacgggct
gatggaagagcttttgatgaactaagaccattaaaaatagaagcaggagtgcttgaaagg
gctgatggatctgcctatgttgaaatgggaggtaacaaagtacttgcagcagtatatggg
ccaagagaacttcatataaggcgcataatgatgccaaataaggctgttttaaggtgcaag
tacaacatggcgccattttcagtggatgaccgtaaaagaccaggaccggacagaaggtct
gtagaaatatctaaaataacatcagaagcactgacacctgcagtgttccttgaaaaattt
ccacgctcaaccatagatgtctttatcgaagtacttgaagccgaaggcggaacaagatgt
gccggaataaccgcagcatccgttgcacttgcagatgcaggagttccaatgagagatatt
gttgttgcatgcgcagcaggaaaatccaatggacaagtagttatggacctctcagaagtt
gaggacaaagaaggtgaagctgaccttccaatagctatgatgccaagaacaggtgaaatc
actcttctacaaatggatggacaccttacaggggaagaatttgaaaaggctctggatctt
gcagtagaaggatgtaaaagaataagtgaagagcagaaaaaagccataaaaaataggtat
ggtgattag
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