Methanobacterium paludis: MSWAN_1424
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Entry
MSWAN_1424 CDS
T01509
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mew
Methanobacterium paludis
Pathway
mew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSWAN_1424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mew03019
]
MSWAN_1424
Messenger RNA biogenesis [BR:
mew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSWAN_1424
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
AEG18438
UniProt:
F6D7A4
LinkDB
All DBs
Position
complement(1552376..1553728)
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AA seq
450 aa
AA seq
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MSVEIIAVGGYEEVGKNMSAVKVGDDVVIFDMGIHLDRIHIHEDTDIARMHSLDLIERGI
IPDDTLMKDVDGKVRAIVFTHGHLDHIGAVAKLAHRYEAPIIATPYTLGLIERTIKGEKK
FNVTNPLQVLNAGEKCQISPDITLEFVGTTHSIPHVVTAALHTSEGIIVYANDFKFDNHQ
TLSPPPNYQRFRELGRKGVLALIVETTNAANYDEVKTHSEKVARILLKDTMEEPLKGNDG
MIVTTFSSHIERIQAICDVANQSNRKILLLGRSMERYCSMAEKLGIINLPKTASVYGSPK
AVNRALARADEKRSDYVLITTGHQGEPDALLPRIANGKTQFTVKPGDNVVISASVIPNPM
NIANRNLMERRLKSCGARIFPNVHVSGHAGREDHRDFIRMLNPENIIPSHGDLQMLSAYT
ELAEEEGYKLGDNLHILRNGQAQVFNDGSD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgaaataatagcagttggcggatatgaagaagtaggtaaaaacatgtccgcc
gtcaaggtcggcgacgacgttgtaatatttgatatgggaattcaccttgataggattcac
attcacgaagatacagacatagcaaggatgcatagtttagatttaattgaaaggggaata
ataccagacgacaccctcatgaaggatgttgacggtaaggtaagggcaatagttttcacc
cacggccacctggaccatataggagcagttgcaaaactcgcacacagatacgaggcacca
ataatcgcaacaccctacacattgggactgatagagaggaccatcaagggagagaaaaag
ttcaacgttacaaacccacttcaagtcctgaacgccggtgaaaaatgccagatatcccct
gacataaccctggaatttgttggaacaactcacagtatacctcatgtggttaccgcagca
ctccatacctcagaaggtataatagtctacgcaaacgactttaaattcgacaaccaccag
acactttccccaccaccaaactaccagaggttcagggaacttggaagaaaaggagtactg
gcactcatagttgagacaaccaacgcagccaactacgacgaagttaaaacccactctgag
aaggtggccaggatcctgctcaaggataccatggaagagcctctcaaaggaaatgacgga
atgattgtcacaacattctcgtcccatatagaaaggatccaggcaatatgtgacgttgct
aatcaaagcaaccgtaaaatcctcctccttggaagatcaatggaacgttactgttcaatg
gcagaaaaattgggaataataaacctcccaaaaacagcaagtgtatatggaagcccaaaa
gcagttaacagggctcttgcaagggctgatgagaaaaggtcagattacgttcttatcaca
acaggccatcagggcgagccagatgcactcctgccacgtattgcaaacggaaaaacacag
ttcactgtaaaacccggggacaacgttgtgatatccgcatctgtcataccaaacccaatg
aacatagccaaccgtaacctgatggagcgaagacttaaatcatgtggtgcaagaatattt
cctaacgtccatgtttcaggacatgctggacgtgaagatcaccgtgattttatcaggatg
ctcaacccagaaaatatcataccatcccacggagacctccaaatgttatcagcttacaca
gaacttgctgaagaagagggctacaaactgggtgacaacctccacatcttaagaaatgga
caggcacaagtttttaatgatggatcagattag
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