Methanobacterium paludis: MSWAN_2316
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Entry
MSWAN_2316 CDS
T01509
Name
(GenBank) Replication factor-A domain protein
KO
K07466
replication factor A1
Organism
mew
Methanobacterium paludis
Pathway
mew03030
DNA replication
mew03420
Nucleotide excision repair
mew03430
Mismatch repair
mew03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSWAN_2316
03420 Nucleotide excision repair
MSWAN_2316
03430 Mismatch repair
MSWAN_2316
03440 Homologous recombination
MSWAN_2316
03460 Fanconi anemia pathway
MSWAN_2316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mew03000
]
MSWAN_2316
03032 DNA replication proteins [BR:
mew03032
]
MSWAN_2316
03400 DNA repair and recombination proteins [BR:
mew03400
]
MSWAN_2316
Transcription factors [BR:
mew03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
MSWAN_2316
DNA replication proteins [BR:
mew03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
MSWAN_2316
DNA repair and recombination proteins [BR:
mew03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
MSWAN_2316
MMR (mismatch excision repair)
MSWAN_2316
DSBR (double strand breaks repair)
HR (homologous recombination)
MSWAN_2316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
Rep_fac-A_C
REPA_OB_2
POT1PC
SHLD2_OB1
tRNA_anti_2
OB_MEIOB_N
POT1
DASH_Dad4
DUF5088
RecJ_OB
DUF7129
DUF3127
DZR_2
Zn_Ribbon_TF
Zn_Ribbon_YjdM
DZR
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
AEG19321
UniProt:
F6D5G9
LinkDB
All DBs
Position
2398122..2400518
Genome browser
AA seq
798 aa
AA seq
DB search
MTGEIKEEIKKEYERIKDKIPYEDFLKKMDERKHDYEDVSFMSDLDIARTITGEYINEEN
TPLSEKNEQKKISELVSGQDNISVTGRIIHISNVKKFTSRKGKNGKLANIILADETGEIR
VVLWTNNIRSLKDVEEGDIVKVNSVEVKQGFREDELQMNMDSTIKKIPEDSEDIFKAFPK
YDDSITQIKDIKGDMQVNVIAGIIRIPRIRSFDKNGKDGKVASLEIQDKTGTIQYTLWNK
DTNLIEDLKLKEGDSVKILGALGRERNGEISLTHSWLGRIIKGEFDVPKFSESILKIGDA
HEMRNVTIIGVVCKNYDKITFQRNDGTAGQVKSVEIQDDTGSIRVTLWNDDADETKLNIK
QKDILKIIGGNIEFDEYSSTGYRINTNWNSKIIINPEIDDKLKKILEERCEYIKPVKVAE
LNDRDDEGDEVDIVGRIVNVYDPNEFQRSDGTTGLVRTIEIGDSTGVIRSSLWDDKAEMP
LKEGDPVKIENARTRLGDYMELSIGKTSRISEPTPEEIKDIPSLTEIENRIYTTKKIDEL
TESDRNVRLIGRIINVYDPNKFQRNDGTTGLVRTIEIGDSTGVIRSSLWDDKAEVPLKEG
DPVKIENPQVKMRENRVEISIGRSTLVTKPKEDEIEKLPSFDEIKDMIYKTRKIDEIEEE
DQNIKVIGQVVEAYGNKILYEMCPNCNKRVTFSDNAYICDICGEEIENPNYLMIISCVVE
DDTGTMRTTFFRTAAEELIGMNTDEVRDVIEKTGDEGSLEEKVEDLVGQEITIIADASFD
EYNEEIRLNAKKVLDKKL
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgactggtgagattaaagaagaaataaagaaagaatatgagagaatcaaggataaaatc
ccatacgaggactttctaaagaaaatggacgaaaggaagcacgactatgaagatgtgagt
ttcatgagtgatctcgatatagcaaggacgatcactggggaatacataaacgaagaaaac
acccctctttcagagaagaatgaacagaaaaaaatctctgaactggtatccggacaggat
aacatcagtgtgactgggcgtatcattcacatctcaaacgttaaaaaattcaccagcagg
aagggaaaaaacgggaaacttgcaaatattatactcgccgatgagaccggcgaaatacgt
gttgtactctggacaaacaacataagatctctcaaagatgtcgaagaaggagatatagtc
aaagtaaacagtgttgaagttaaacaagggttcagagaggatgaactacagatgaacatg
gactcaacaattaaaaaaatccctgaagattctgaagacattttcaaggcctttccaaag
tatgatgacagcataacccagataaaggacattaaaggtgacatgcaggttaacgtgata
gcgggaatcatcaggataccaaggataagaagcttcgataagaacggtaaagatggtaaa
gtcgcttctctcgaaattcaggacaaaactgggacaatacagtacactctctggaacaag
gacactaatctcatagaagatcttaaactcaaagagggagattctgttaaaatactcgga
gcactgggccgtgaaaggaatggagaaatatctttaacccattcatggcttggaagaata
attaaaggagaatttgatgttccgaaattcagtgaaagcattcttaaaattggagatgcc
catgaaatgaggaacgtcaccataattggggttgtgtgcaaaaattatgataaaataacc
tttcaaagaaatgacgggaccgctggacaagttaagtccgttgaaatccaggatgatacc
ggcagtataagggttacactctggaacgatgacgccgatgaaacaaagttgaacattaaa
cagaaggacatactcaaaataatcggcggaaacatcgaatttgacgagtattccagtaca
ggatacaggataaacaccaactggaacagcaaaataatcataaatccggaaatagatgat
aaattgaaaaaaatactggaagaacgttgcgagtacatcaaacctgtcaaagtagctgag
ttaaatgatagggatgatgaaggggacgaagtggacatagtgggaagaatagtaaatgtc
tacgatccaaatgaattccagagaagcgatggcaccacaggattggttagaaccattgaa
ataggagacagcacaggagtcatacgatcctcactctgggacgacaaagcagaaatgcca
ttaaaagagggcgatccagtaaaaatcgaaaatgcaagaaccaggcttggagattacatg
gagctcagcatagggaaaacttcgaggataagtgaaccaactcctgaagaaattaaagat
atcccgtctttaaccgaaatagagaacaggatatacacaactaagaaaatcgatgaactt
acagagagtgaccgtaacgtaagactgattggaaggataataaacgtttatgatccaaat
aaatttcagagaaatgacggtaccacagggttggtcagaaccatcgaaataggagacagt
accggagtcatacgatcctcactctgggacgacaaagcagaagtaccattaaaagagggc
gatccagtaaaaatcgaaaacccacaggtaaaaatgcgagaaaatagagtagaaataagt
attggaagaagtacccttgttacaaaaccaaaagaagatgaaattgagaaattaccgtct
ttcgatgaaattaaggatatgatctacaaaacacggaagatcgatgaaattgaagaagaa
gaccagaatataaaagtaataggacaggtcgtagaggcatatggaaacaaaatactctat
gaaatgtgtccaaattgtaataaaagagttacattctctgataacgcttatatctgcgat
atatgtggggaggaaatagaaaaccctaattacctcatgataatttcctgtgtggtagag
gacgatactggaaccatgagaaccaccttctttagaacggcagctgaagagttaattgga
atgaataccgatgaagtgagggacgttatcgagaaaactggagatgagggttcccttgaa
gagaaagttgaggatctggttggtcaggagatcaccataattgcagatgcaagcttcgat
gagtacaacgaagagatacggctcaatgccaaaaaagtgctggataaaaaactttga
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