Mesorhizobium sp. WSM4906: QAZ22_18705
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Entry
QAZ22_18705 CDS
T10806
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mewm Mesorhizobium sp. WSM4906
Pathway
mewm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mewm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QAZ22_18705 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mewm03019
]
QAZ22_18705 (rnr)
03016 Transfer RNA biogenesis [BR:
mewm03016
]
QAZ22_18705 (rnr)
Enzymes [BR:
mewm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QAZ22_18705 (rnr)
Messenger RNA biogenesis [BR:
mewm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QAZ22_18705 (rnr)
Transfer RNA biogenesis [BR:
mewm03016
]
Prokaryotic type
tRNA degradation factors
QAZ22_18705 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
WFP73785
LinkDB
All DBs
Position
complement(3933208..3935526)
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AA seq
772 aa
AA seq
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MARRISGRSHGDPRSADTRASVKDDYRPSRDEILRYIAENPDRSGKREIAKAFALRGEDR
IWLKDLLRDLRDEGLLTKDRKRHTRAGAVPHVAVLDIVGRDADGVLLANPSEYTGPGSPP
VIAIRISRGASGPVPGVGDRVLAKTFPTDDASAVHGGPAYTGRVMKVFEKRSEAVLGVFR
VLKDGSFRIEPAERRQPELIVDKEFQNGAKNGDLVEVEPARASRYGLPRAKVLAVLGSLT
SEKAVSMIAIHAHDIPHVFPADVIAEADAMKPAMLAGREDWRDLPLVTIDPADAKDHDDA
VFATSDTDEKNPGGIIATVAIADVAAYIRYGTPLDREALKRGNSVYFPDRVVPMLPERIS
NDLCSLREGEDRPAIAVRMTFSAEGRKLRHSFHRVMMKSAAKLAYPQAQAAIDGMPDDKT
GPILDSVLKPLWDAYAVLKRGRDARQPLELDLPERKILLKSDGTVDRVVVPERLDAHKLI
EEFMIQANVAAAETLEGKKEPLVFRIHDAPSLAKQESLREFLHTLGLSLARGAQMRPGQF
NGILERVRGADNEALVNEVVLRSQSQAEYSPKNIGHFGLNLRRYAHFTSPIRRYADLIVH
RGLIAALGLGPGGLAQQEADRLEEVAALISATERRAMAAERDTVDRLIAAYLAERINDTF
DARISGVTKAGLFVQLPQYGADGFIPVSSLSGDYYIYDETARSLFGERTGKGYQLADRVE
VRLLEVAPMAGAMRFEMLSDPKPLPGSRRSFHKAKGRARASQSRFGPRGRRR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgcaggatctccggaagaagccacggcgatccgcgcagcgccgacaccagggcc
agtgtcaaggacgactaccggccctcgcgtgacgaaatcctgcgctatatcgccgagaat
cccgatcgctccggaaagcgcgagatcgccaaggctttcgcgttgcgtggcgaggaccgc
atctggctgaaggacctgctgcgcgacttacgggacgagggcctgctgacgaaggaccgc
aaacgccacacccgcgccggcgccgtgccgcatgtcgccgtgctcgacattgtcggtcgc
gacgccgacggcgtgctgctggccaatccgagcgaatataccggtcccggctcgccgccc
gtcattgccatccgcatttcgcgcggcgccagcggccccgtccccggcgtcggcgaccgc
gtgctcgccaagaccttcccgactgacgatgcaagtgccgtccatggcggccccgcctac
accgggcgggtgatgaaggtcttcgagaagcgcagcgaagcggtgctcggcgtcttccgc
gtgctgaaggacggcagctttcggatcgagccggcggagcggcgccagcccgagctcatc
gtcgacaaggaattccagaacggcgccaaaaacggcgacctggtcgaggtcgagccggcc
cgcgcctctcgctacggcctgccgcgcgccaaggtgctggcagtgctgggctcgctgacc
agcgagaaggcggtctcgatgatcgccatccacgcccacgacattccgcacgtctttccg
gccgatgtgattgccgaagccgatgcgatgaaaccggcaatgcttgccggccgcgaggac
tggcgcgacctgccgctggtcaccatcgatccggccgacgccaaggatcatgacgacgcc
gtctttgccacgtccgataccgacgagaagaatcccggcggcatcatcgccaccgtggcg
atcgccgacgtcgcggcctatatccgctacggcacgccgctcgaccgcgaggcgttgaag
cgcggcaactcggtctatttcccggaccgcgtcgtgccgatgctgccggagcgcatctcc
aacgacctttgctcattgcgcgaaggcgaggatcggccggccatcgccgtgcgcatgacc
ttttccgcggaaggccgcaagctcaggcactccttccaccgtgtcatgatgaagtcggct
gcgaagctcgcctacccgcaggcgcaggcggcgatagacggcatgcccgacgacaagacc
gggccgatcctcgacagcgtcttgaagccgctctgggatgcctatgcggtgctgaagcgg
ggccgcgacgcccgccagccgctggagctcgacctgccggagcgcaagatactgctcaag
agcgacggcaccgtcgaccgtgtcgtcgtcccggagcgcctcgacgcccacaagctcatc
gaagagttcatgatccaggccaatgtcgctgccgccgagacgcttgaaggcaagaaggaa
cctctcgtctttcgcatccatgacgcgccttctctggccaagcaggaatcgctgcgggaa
ttcctgcacacgcttggcctgtcgctggcgcgtggcgcgcaaatgcggccgggacagttc
aacggtattctggagcgcgtgcgcggcgccgacaacgaggcgctggtcaacgaggttgtg
ctgcgctcgcagagccaggccgaatattcgccgaagaacatcggccatttcggtctcaac
ctgaggcgctacgcgcatttcacctcgccgatccgccgctacgccgacctcatcgtgcat
cgcggactgattgccgcgctgggcctcggccccggcggcctggcacagcaggaggccgat
cggctggaggaggtcgcagcgctgatctctgccacggaacgccgtgccatggccgccgaa
cgcgacactgtcgaccggctgatcgccgcctatctcgccgagcgcatcaacgataccttc
gacgcgcgcatctccggcgtcaccaaggcgggactctttgtccaattgccgcaatatggc
gcggatggtttcatcccggtgtcaagtttgagcggcgactactatatctacgacgaaacc
gctcgatccctgttcggagaacgcaccggcaagggctatcagcttgccgaccgcgtcgag
gttcggttgctcgaggtcgcgccgatggccggcgcgatgcgtttcgagatgctgagcgat
ccgaagccgctgccaggctcgcgacggtcgttccacaaggccaagggccgcgcccgcgca
tcgcagtcgcgcttcgggccccgcggcaggagaaggtga
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