Mesorhizobium sp. WSM4906: QAZ22_20735
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Entry
QAZ22_20735 CDS
T10806
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mewm Mesorhizobium sp. WSM4906
Pathway
mewm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mewm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QAZ22_20735 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mewm03021
]
QAZ22_20735 (rpoC)
03400 DNA repair and recombination proteins [BR:
mewm03400
]
QAZ22_20735 (rpoC)
Enzymes [BR:
mewm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QAZ22_20735 (rpoC)
Transcription machinery [BR:
mewm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QAZ22_20735 (rpoC)
DNA repair and recombination proteins [BR:
mewm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QAZ22_20735 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RnfC_N
Phage_cement_4
Motif
Other DBs
NCBI-ProteinID:
WFP74161
LinkDB
All DBs
Position
4335884..4340080
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVMNLFNPQAPAQVFDSIRISLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDSFTA
MIGAEAIHDLLAGMDLEKIAGDLRSELASTTSELKQKKLLKRLKVVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPASGAPIIVPSQDMVLGLYYLSIVNQNEPGEGMVFADMGELQHALE
TKAVTLHAKIKGRFRTVDAEGKVVSKIYDTTPGRMIIGELLPKNVNVPYETANQEMTKKN
ISKMIDTVYRHCGQKETVIFCDRIMALGFAHACRAGISFGKDDMVIPDTKLKLVSDTEAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCSEKVADEMMARIKAVEFEENGRQKPMNSIYM
MSHSGARGSPTQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVNSLDCGTDKGLTMQPIVDAGQIVASVGQRVLGRTA
LDDINHPVSGELLVKAGKLMDERDVEQIEKAGVQSVRIRSALTCEVRTGVCAVCYGRDLA
RGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDSSFLEASYEGKVEIRNRNV
VRNSDGQQMVMGRNMAVLILDEAGKERATHRVAYGSRIFVDDGDKVKRGQRIAEWDPYTR
PILTEIEGKVAFEDLVDGISVQETADESTGITKREVIDWRSTPRGSDLKPAIVVQDAKGK
VGKLSKGGDARFLLSVEAILSVEPGAHVRPGDVLARIPMESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTIRFGRDYKNKRRIIIEPHDSTLEPVEYLIPKGKPFHLQDGDVIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVEI
TAQGDSTYIPGDHVDVIELEEVNERLIEDGKKPAEGQPVLLGITKASLQTPSFISAASFQ
ETTRVLTEAAVAGKTDMLQGLKENVIVGRLIPAGTGGTMSQIRRIATSRDELIIDERRKA
SGVEVAEPMLTNMVNAAQ
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatctcttcaacccccaggcgcctgcgcaggtgttcgattcg
atccggatctcgcttgccagccctgagaagattctgtcctggtcgttcggcgagatcaag
aagccggagaccatcaactaccgcaccttcaagccggagcgtgacggtctgttctgcgcg
cgcatttttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgagaagtgcggcgtcgaagtcacgctgtcgcgcgtccgccgc
gagcgcatgggccatatcgagctcgccgcgcccgtcgcccacatctggttcctgaagtcg
ctgccctcgcgcatcggcacgctgctcgacatgacgctgaaggacatcgagcgtgtgctt
tacttcgagaactacatcgtcaccgagcccggcctcaccgcgctgaaggagcaccagctg
ctcagcgaggaagagtacatgctggccgtcgacgagtatggcgaggattccttcaccgcc
atgatcggcgccgaggccatccatgacctgctcgccggcatggacctggagaagatcgcc
ggcgacctgcgctccgagctggcttcgaccacgtccgagctcaagcagaagaagctcttg
aaacggctgaaggtcgtcgagaacttcatggaatccggcaaccgcccggaatggatgatc
atgaaggtggttccggttatcccgccggacttgcgcccgctcgtcccgctggacggcggc
cgcttcgcgacgtccgacctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgagctgcgcgcgccgggcatcatcgtgcgcaacgaaaagcgcatg
ctgcaggaggccgtcgacgcgctcttcgacaacggtcgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgctcggtcatcgtgaccggt
ccggagctcaagctgcatcagtgcggcctgccgaagaagatggcgctcgaactcttcaag
cccttcatctacgcccgcctcgacgccaagggtttctcctcgacggtcaagcaggcgaag
aagctggtcgagaaggagcgtccggaggtttgggatatcctcgacgaggtcatccgcgag
catccggtgctgttgaaccgcgcgccgacgctgcaccgcctcggcatccaggcgttcgag
ccgatcctgatcgaaggcaaggcgatccagctgcatccgctggtctgcacggccttcaac
gccgacttcgacggtgaccagatggcggtccacgtgccgctgtcgctggaagcgcagctc
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcacccggcctccggcgcgccg
atcatcgtgccgtcgcaggacatggttctcggtctctactatctgtcgatcgtcaaccag
aacgagccgggcgaaggcatggtgttcgccgacatgggcgagctccagcatgcgctggag
accaaggccgtcacgctgcacgccaagatcaagggtcgcttccgcacggtcgatgccgaa
ggcaaggtcgtgtcgaagatctacgacaccacgcctggccgcatgatcatcggcgagctt
ctgccgaagaacgtcaacgtgccttatgagaccgccaaccaggagatgaccaagaagaac
atctccaagatgatcgacaccgtctaccgccactgcggccagaaggagacggtcatcttc
tgcgatcgcatcatggccctcggcttcgcccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtgatcccggacaccaagctgaagctggtctccgacaccgaggctttg
gccaaggagtacgagcagcagtacaatgacggcctgatcacccagggcgagaagtacaac
aaggtggtcgacgcctgggccaagtgctcggaaaaggtcgccgacgagatgatggctcgc
atcaaggcggtcgagttcgaggaaaacggccgtcagaagccgatgaactcgatctacatg
atgtcgcattcgggtgcgcgcggttcgcccacccagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccttcgggcgagatcatcgagacgcccatcatctcgaacttcaag
gaaggccttaccgtgctcgagtacttcaactcgacccacggcgcccgcaagggtctggcc
gacactgcgttgaagacggcgaactcgggttacctgacccgccgtctggtcgacgtggcg
caggactgcatcgtcaattcgctggattgcggcaccgacaagggcctcaccatgcagccg
atcgtcgatgccggccagatcgtcgcctcggtcggtcagcgcgtgctgggccgcacggcg
ctcgacgacatcaaccatccggtctccggcgaattgctggtcaaggccggcaagctgatg
gacgagcgcgacgtggagcagatcgagaaggccggcgtgcagtcggtgcgcatccgctcg
gcgctgacctgcgaggtcaggaccggcgtctgcgcggtctgctatggtcgcgatcttgcc
cgcggcacgcccgtcaaccagggcgaggctgtcggcgtcatcgctgcgcagtcgatcggc
gagccgggcacccagctcaccatgcgcaccttccacatgggcggcaccgcgcaggtggtg
gactcttcgttccttgaagcctcctatgagggcaaggtcgagatccgcaaccgcaacgtg
gtgcgcaactccgacggccagcagatggtcatgggccgcaacatggcggtcctgatcctc
gacgaggccggcaaggagcgcgccacgcaccgcgtcgcctatggctcgcgcatcttcgtg
gacgatggcgacaaggtgaagcgcggccagcgcatcgccgagtgggatccttatacccgc
ccgatcctcaccgaaatcgagggcaaggtggcgttcgaggatctggtcgacggcatttcc
gttcaggaaacggccgacgaatcgaccggcatcaccaagcgcgaggtcatcgactggcgc
tcgacgccgcgcggcagcgacctgaagccggcgatcgtcgtccaagacgccaagggcaag
gtcggcaagctgtcgaagggcggcgatgcgcgcttcctgctctcggtcgaggccatcctc
tcggtcgagccgggcgcacatgtccgtccgggcgacgtgctggcgcgtatcccgatggaa
agcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgaactgttcgaggct
cgccgtccgaaggaccacgccatcatcgccgagatcgatggcacgatccgcttcggccgc
gactacaagaacaagcgtcgcatcatcatcgagccgcatgactcgacgctggagccggtc
gagtacctgatcccgaagggcaagccgttccatctccaggacggcgacgtcatcgagaag
ggcgactacatcctcgacggcaacccggcgccgcacgacatcctggcgatcaagggcgtg
gaggcgcttgcgtcctacctcgtcaacgagatccaggaggtctaccgcctgcagggcgtg
tcgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatc
accgcgcagggcgactcgacctacattcctggcgaccacgtcgacgtgatcgagctggaa
gaggtcaacgagcgcctgatcgaggacggcaagaagccggccgaaggtcagccggtgctg
ctcggcatcaccaaggcctcgctgcagacgccgtccttcatctcggccgcctccttccag
gagacgaccagggtgctgaccgaagctgcggttgccggcaagaccgacatgctgcagggt
ctgaaggaaaacgtcatcgtcggccgtctgatcccggccggcaccggcggcacgatgagc
cagatccggcgcatcgccacctcgcgcgacgagctgatcatcgacgagcgccgcaaggcg
tccggcgtcgaggtcgccgagccgatgctgaccaacatggtcaacgccgcgcagtaa
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integrated database retrieval system
