Methylorubrum extorquens PA1: Mext_0006
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Entry
Mext_0006 CDS
T00640
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mex
Methylorubrum extorquens PA1
Pathway
mex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mext_0006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mex03019
]
Mext_0006
03400 DNA repair and recombination proteins [BR:
mex03400
]
Mext_0006
Enzymes [BR:
mex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mext_0006
Messenger RNA biogenesis [BR:
mex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mext_0006
DNA repair and recombination proteins [BR:
mex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Mext_0006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABY28435
LinkDB
All DBs
Position
4936..6783
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AA seq
615 aa
AA seq
DB search
MTARLDEARAALKKTFGYDDFRPGQDEVIGAVLDGTDVFAVMPTGSGKSMTYQLPALVDA
GLTVVVSPLIALMHDQVQQMHAFGIEAATLNSTIAETASRETWRKIRSGELRLLFVSPER
LLMDGCMEALRGAGVRRLAVDEAHCVSQWGHDFRPEYREIARAREALGNVQTLALTATAD
AATRAEIAERLFPAGRPPRTFVHSFDRPNIRLTFQPKDNPTRQLERFLRDRRAESGIIYC
SSRKRVEQLADTLKGDGFNALPYHAGLDQVTRARNQDTFLQEDGVVMTATIAFGMGINKP
DVRYVCHSDMPTNIEGYYQEIGRAGRDGLPSDTLTLYGLDDMALRRRQIDEKEISEERRR
VERRKLEAMIALCEGAACRRQSLLGYFGEASERCGRCDLCRGGIALIDGTVAAQKLLSAI
VRTGQRFGAAYVCDVVHGKESESIRRNGHAALKTFGVGNDKPVAAWRALLRQLFAAGAVA
ENTDGYGGLVMTEKGEAILFGRETIEVRPDPEPKKAEPRSRRATPRDDEANALSEADEAL
FQHLRGLRATIARAEGIAAFMVFPDRTLIEMARSKPVDLWALRTVHGVGERKREAYGERF
TDTIREFLADAKRAG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacagctcgcctcgacgaggcccgcgccgcgctgaaaaaaaccttcggctacgacgat
ttccgtcccggccaggatgaggtgatcggcgccgtgctcgacggaacggacgtgttcgcg
gtgatgccgacgggctcgggcaagtcgatgacctaccaattgccggccctggtcgatgcc
gggctcaccgtcgtggtctcgccgctgatcgcgctgatgcacgatcaggtgcagcagatg
cacgccttcggcatcgaggcggcgaccctcaactcgacgatcgcggagacggcgtcgcgg
gagacgtggcgcaagatccgctccggcgagctgcgcctgctgttcgtttcgccggaacgt
ctgctgatggacggctgcatggaggccctgcgtggggccggcgtgcggcggctcgcggtg
gacgaggcgcactgcgtctcgcaatggggccacgatttccgccccgaataccgcgagatc
gcccgcgcccgcgaggcgctcggcaacgtgcagaccctggcgctcaccgccaccgccgac
gccgcgacccgcgccgagatcgccgagcggctgtttccggcggggcggcccccgagaacc
ttcgtccactccttcgaccggcccaatatccggctgaccttccagcccaaggacaacccg
acccgccagttggagcgcttcctgcgtgaccgccgcgcggagagcggcatcatctactgc
tcctcgcgcaagcgggtggaacagctcgccgacacgctcaagggggacggcttcaacgcc
ctgccctatcatgccgggctcgatcaggtcacgcgggcgaggaaccaagacaccttcctg
caggaggacggcgtggtgatgaccgccacgatcgccttcggcatgggcatcaacaagccg
gatgtgcgctacgtctgccactccgacatgccgaccaacatcgagggctactatcaggag
atcggccgcgccggccgcgacgggctgccctccgacaccctgaccctctacggcctcgac
gacatggcgctgcgccgccgccagatcgacgagaaggaaatctcagaggagcgccgccgg
gtcgagcggcgcaagctcgaggcgatgatcgctctgtgcgagggcgctgcctgccgccgc
cagtcgctgctcggctatttcggcgaggcgagcgagcgctgcgggcgctgcgatctctgc
cgcggcggcatcgccctcatcgacgggacggtggcagcccaaaagctgctctccgccatc
gtccgcaccgggcagcgcttcggcgcggcttatgtctgcgacgtggtgcatggcaaggag
agcgaatccatccgtcgtaacggccatgctgcgctcaagactttcggtgtcggcaacgac
aagccggtggcggcgtggcgcgccctgctgcgccagctcttcgcggccggagcggtggcc
gagaacaccgacggctatggcggcctcgtgatgaccgagaagggcgaggccattctgttc
ggccgtgaaacgatcgaggtcaggcccgatccggagccgaagaaggccgagccgaggagc
cgccgtgccacgccgcgcgacgacgaggcgaatgcgctgagcgaggcggacgaagcgctg
ttccagcacctgcggggccttcgcgccaccatcgcgcgggcggaaggcatcgccgccttc
atggtgttccccgaccgcaccctgatcgagatggcgcgctcaaaacccgtcgatctctgg
gcgctccgaaccgtccatggcgtcggcgagcgcaagcgcgaggcctatggcgagcgcttc
accgacacgatccgtgaattcctggccgacgcgaagcgcgccggctga
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