Methylorubrum extorquens PA1: Mext_0305
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Entry
Mext_0305 CDS
T00640
Name
(GenBank) SMC domain protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
mex
Methylorubrum extorquens PA1
Brite
KEGG Orthology (KO) [BR:
mex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mex03400
]
Mext_0305
DNA repair and recombination proteins [BR:
mex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Mext_0305
Archaeal homologous recombinant proteins
Mext_0305
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_29
ABC_tran
nSTAND_NTPase5
nSTAND3
AAA_22
AAA_21
Motif
Other DBs
NCBI-ProteinID:
ABY28729
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Position
341415..345161
Genome browser
AA seq
1248 aa
AA seq
DB search
MRILAIRGENLASLAAPFAVDLAAEPLGATGLFAITGETGAGKSTILDALCLALYGRYPR
VAVSRREDVPDPGGEALSASDGRAILRRGAGSGYAEVDFIGQDGVAYRVGWEAFRARNRA
TGKLQAERRRLHRLDDGSAVAAGKTQVLDRVVALTDLTFDQFRRTVLLAQGEFDAFLLAA
EGERAELLEKITGTAIYSEISKRVHLGFEEHRRAVEALELRRGEIGLLDAEGLSSRNAES
EALRAGVEAWRGEQAAVGRILETARRIEAARTALAEAERRAVSAGESLDAAGPDRARLAE
LDAVEPLRGRAEALGETARERGEAQARVEATSARVRDAHAAAATAEAKRAEANAGDEAAE
AVFKSFGPLWDRAAALDATIAIAEQEAAAAAQAALRSNEAAAAADAALTAIDRRLDEARA
ARDAAARQLEADRSHAPLAERGDDVARRIRERARLQEQAEAAGKESAARRAEIAGCDGEA
EAGTARLTAFRARRETLAGARAEREAALAALAEPAAQARSAALEGLLDALREAYALAGRH
GTALADRAAATEAEAEAGLVATEAAARYGAEDQALHEAGIRRAEIAPLAELAEESVSREA
ARLRSLLVAGGPCPVCGSSDHPHAHESDGALGRLAEEMRARRAELDVRIGEHQAARDRAR
GDFAAAEGRRDDAQERAAAAAEAAAATAARYRATLPGLLASLEAAGLAAVLPPGPDAPAL
AAAGTTARAERDATLHVLATARTLRSEIDGLIRERDAAEARAEAEARALDALTRRRTEAG
LAAERSESTRAALMQRVAELADEIAPALSAADLSLADLDRAPEMCADRVSRLGQAYAALR
TRLAGLEAQLGALAPERAAAASSREAETRAAVKARAEAEERQTRLNQARAERAGLLGGLQ
TGTHRTRLNNERRAAREALQAAQTACAEAARALTGAVTDEAAAIAALERAAARHSSAEDA
FAQACGERGREAVAALLAVPIETRDALRAGLDRLAREAAETRTALATRRADVEALDTEAG
IDVAAAEAETTRLADAMAQAQQRLGALDAELRRDEAARAKAADLAGEIEAATAELTTWHR
VEEAIGSAGGDRFRRFAQGVTLDHLVHLANEQLRALSPRYRLARSVGADLALHVVDRDMG
DERRATRSLSGGERFLVSLALALALSGLEGRQSFVDTLFIDEGFGSLDAETLDLAVDALE
TLQGRGRKVGVITHVAGMMERIAVQIRVEKRGSGRSVVRVVDRGAAIV
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcctcgcgatccgcggcgagaacctcgcgagcctcgccgcgcccttcgcggtc
gatctcgcggccgagccgctcggcgccaccggcctgttcgccatcaccggcgagaccggc
gccggcaagtccaccatcctcgacgcgctctgcctcgcgctctacggccgctatccccgc
gtcgccgtgagtcgccgggaggacgtgcccgatcccggcggcgaggcgctgagcgccagc
gacggtcgggcgatcctgcgccggggcgcgggttcagggtatgccgaggtcgatttcatc
ggccaggacggcgtcgcctaccgcgtcggctgggaggcttttcgcgcccgcaaccgggcg
accggaaagcttcaggcggagcggcggcgcctgcatcggctcgacgacggcagcgccgtc
gccgcgggcaagacgcaggtgctcgaccgggtggtcgcactgaccgacctgaccttcgac
cagttccgccgcacggtgctgctggcgcagggcgagttcgacgccttccttctcgctgcc
gagggcgagcgggccgagcttctggagaagatcaccggcacggcgatctattccgagatc
tcgaagcgggtgcatcttggcttcgaggagcaccgccgcgcggtcgaggcgctggagctc
cgccgcggcgagatcggtctgctcgatgcggagggtctctcgagccgcaacgctgagagc
gaggctttgcgcgccggggtcgaggcatggcgcggcgagcaggccgcggtcggccgcatc
ctggagacggcccgccggatcgaggccgcgcgcacggcgctcgcggaggccgaacggcgc
gccgtgtcggcgggtgaaagcctggacgcggccgggccggaccgggcccggcttgccgaa
ctcgacgcggtcgagccgctgcgcggacgggccgaggccttgggcgagaccgcccgcgag
cgcggcgaggcgcaggcgcgggttgaagcgaccagtgcccgtgtccgagacgcccacgcc
gccgccgcgacggccgaggcgaagcgggctgaggcgaatgcgggggacgaggcggcggaa
gccgtcttcaagagcttcgggccgctgtgggaccgagccgccgcgctcgacgcgaccatt
gccatcgccgagcaggaagccgcggctgccgcgcaggcggccctccgatcgaacgaagcg
gcggcagcggcggatgccgcactcaccgcgatcgatcgccgcctcgacgaagcgcgggcg
gcacgcgacgccgcggcccgccagctcgaggccgaccgcagccatgcgccgctggccgaa
cgcggcgacgatgtcgcccggcgcatccgtgagcgagcgcggctgcaggagcaagcggag
gcggccgggaaggaaagcgcggcgcggcgcgccgagatcgccggttgcgacggtgaggcg
gaagccggcacggcccgcctcaccgcgttccgcgcccgccgagagacgttggccggtgct
cgcgcggaacgcgaggccgcactcgctgcgctcgccgagcccgccgcgcaggcgcgcagc
gccgctctcgaagggctgctcgatgccctgcgcgaggcctacgccctggccggacgccac
ggcacggcactcgccgaccgggccgccgccacggaggccgaggcggaagcgggcctggtc
gcgaccgaagccgccgcgcgctacggggcggaagaccaagcgttgcacgaggccgggatc
cgccgcgccgagatcgcgcccctggccgaactggccgaggaaagcgtctcgcgcgaggcc
gcccgcctgcgcagcctgctcgtcgccggcgggccctgccctgtctgcggcagctccgac
catccgcacgcccacgaatccgacggcgcgctcggccgcctcgccgaggagatgcgggcc
cgtcgcgccgaactcgatgtgcggatcggcgagcatcaagccgcccgcgaccgcgcccgc
ggtgacttcgcggcggcggagggccggcgcgacgatgcccaagagcgcgccgccgccgcg
gccgaggcggcggcggccaccgctgcccgctatcgcgccacgctgcccggtctcctggcc
tcgctcgaagcagcaggcctcgcggccgtgctgccgccagggcccgatgcgccagcgctc
gccgcggccgggacgaccgcccgggccgaacgcgacgccacgctgcacgtgcttgccacg
gcgcggacgctgcgcagcgagatcgacggactgatccgcgaacgcgacgcggcggaggcg
cgggccgaagcggaggcccgcgcgctcgacgccctcacccggcgccggaccgaggcgggt
ctcgcggccgagcgctcggagagcacgcgggccgccctcatgcagcgcgtggcggagctg
gcagacgagatcgcgcccgccctgagcgctgccgacctgagcctggccgatctcgatcgg
gcgcccgagatgtgcgccgaccgtgtctcgaggctcgggcaggcttacgcggcattgcgc
acccggctggccggcctggaagcgcaactcggcgccctggcgcccgaacgggccgccgcc
gcatcctcgcgggaggccgagacgcgggccgccgtgaaggcccgcgcggaggccgaggaa
cggcagactcgcctgaaccaggcccgtgcggaacgcgccgggctcctcggcggcttacag
accggcacccaccgcacccggctcaacaacgagcgccgtgccgcccgcgaagccctccag
gccgcgcagaccgcctgcgctgaggccgcccgcgcgctgaccggtgccgtcaccgacgag
gccgctgccatcgcggccttggagcgtgccgccgcacgccacagctcggccgaggacgcc
ttcgcgcaggcctgcggtgagcgcgggcgcgaggcggtggccgcgctgctcgccgtgccg
atcgagacccgcgacgcgctgcgggccggcctcgaccgactggcgcgtgaggccgccgag
acgcgaaccgccctcgccacccgccgcgcggatgtcgaggccctggacaccgaggccggg
atcgacgtcgccgccgctgaggccgagacgacccggcttgccgacgccatggcgcaggcc
cagcaacgcctcggcgccctcgatgcggagttgcgccgggatgaggccgcccgcgccaag
gccgccgacctcgcaggggagatcgaggcggccacggccgagctgacgacgtggcacagg
gtcgaggaggccatcggctcggcgggcggcgaccgcttccgccgcttcgcgcaaggggtg
accctcgatcacctcgtgcatctcgccaacgaacagctccgggccctgagcccccgctac
cgcctcgcccgcagcgtcggcgccgacctcgccctgcatgtggtggaccgcgacatgggc
gacgagcgacgggcgacccgtagcctgtcgggcggtgaacgcttcctcgtctcgctggcg
ctggcgctggccctgtcgggcctggaagggcggcaatccttcgtcgacaccctgttcatc
gacgagggcttcggctcgctcgacgccgagaccctcgatctggccgtcgatgccctcgaa
acgctccagggccgcggccgtaaggtcggcgtcatcacgcacgtcgcgggaatgatggaa
cgcatcgccgtgcagatccgggtggagaagcgcggcagcggccgcagcgtggtccgggtc
gtggatcgcggcgctgccatcgtttga
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